KEGG   Devosia sp. H5989: XM25_14700Help
Entry
XM25_14700        CDS       T04003                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
deq  Devosia sp. H5989
Pathway
deq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:deq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    XM25_14700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:deq03400]
    XM25_14700
Enzymes [BR:deq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XM25_14700
DNA repair and recombination proteins [BR:deq03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     XM25_14700
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AKR57018
UniProt: A0A0K0TZ58
LinkDB All DBs
Position
complement(3010502..3013075)
Genome map
AA seq 857 aa AA seqDB search
MAARAAQTLLKDYQAKRDFARTREPSGKQAGRTGKGKAGIFVVQQHDATRMHWDFRLELD
GVLKSWAVTRGPSNNPSDKRLAVRVEDHPLDYAHFEGTIPEGEYGGGTVMLWDEGTWEPL
GDPHKGLEEGDLKFRLNGQRMKGEWVLVHMKGRDRGGKENWLLIKHRDEYASDDGEALVE
DNTTSVETGRNLEGIAKGLKSRKAPAKPKVWTHGKEVSLPDFRPPELATLVDAVPQGSGW
IFEMKYDGYRCLAAIAGEEVRLYTRNGNDWTTQFGAIREPLAGLTKGSALIDGELCAFDR
EGHTDFSTLKNALSTGAPLVYFVFDLLEEDGEDLTRLPLLERKERLAKLLGKVDKTSPVQ
FSDHIEGNGQKVLDTLCAAGHEGVIAKRADSHYLGERTKAWLKVKCLKRQEFVIGGWRPS
DKKRTFASLLLGAWENDRLVYHGRVGTGFSDKEAAALQKALDERARKQTPFANAPRDISR
VARWVEPDLVAEIAYSEVTPDGALRHPSFIGLREDKPARSVKMEVASAPPAEAASSKGKG
ARVQHLDPAKGVAAAERLGIRLTSPDRIAYPGQGVTKGELVAYYDAVADAMLPYIKDRPL
SLVRCPQGRAKACFFQKHDTGGFPAAMKTVEIAEKDGSKESYFYVSDLSGIVAAVQMNTL
EFHLWGSRRDKIELPERIIFDIDPDEGLGFEHVRAAAIDIRKGLESWGLESFAMLTGGKG
IHVIAPIARRTEWPEVKLFCKTFAQTMAEAEPERFTATLSKEKRQGKMFIDYLRNERGAT
AISPYSTRSREGAPVATPVTWAELETIERANAFSLAQAAERAAGPNPWPDYFKLEQAITN
AMVNAVAGPVRKSAPKR
NT seq 2574 nt NT seq  +upstreamnt  +downstreamnt
atggccgcccgcgctgcccagacgctgctcaaggactaccaggccaagcgcgacttcgcc
cggacgcgcgaaccctccggcaagcaggccggcaggaccggcaaggggaaggccggcatc
ttcgttgtccagcagcatgacgccacccgcatgcattgggacttccggctcgagctggat
ggcgtgctcaagagctgggcggtgacgcgcggcccatcgaacaacccttcggacaagcgg
ctcgccgtgcgggtcgaggatcacccgctcgactacgcccatttcgagggcacgattccg
gagggcgaatatggcgggggcaccgtcatgctctgggacgagggcacctgggagccgctg
ggggatccccacaaggggctcgaggagggcgacctcaagttccgcctcaacgggcagcgc
atgaagggcgaatgggtgctcgtccacatgaaggggcgcgatcgcggcggcaaggagaac
tggctgctcatcaagcaccgggacgaatatgcgagcgatgacggggaggcactggtcgaa
gacaacaccacgagcgtcgaaacgggccggaacctggaggggatcgccaagggtctcaag
tccaggaaggcgcccgccaagcccaaggtctggacgcatggcaaggaagtaagtcttccc
gatttccgcccgcccgagttggcgacgctcgtcgatgccgtgccccagggctcgggctgg
atcttcgagatgaaatacgacggctaccggtgcctggcggctatcgcaggcgaagaggtt
cggctctacacccgaaacgggaacgactggaccacccagttcggtgcgatccgcgagccg
ctcgccggcttgacgaagggcagcgccctcatcgacggagaattgtgcgccttcgaccgc
gagggccataccgatttttcgacgctcaagaacgcgctttcgacgggtgcgccgctggtc
tatttcgttttcgaccttctcgaagaggacggcgaggacctgacgcggctgcccctgctc
gagcgcaaggagcggctggccaagctcctggggaaggtcgacaagacctccccggtccag
ttttcggatcatatcgagggcaatgggcaaaaggtgctcgatacgctatgcgcggcgggc
cacgagggcgtcatcgccaagcgcgcggactcacactacctgggcgagcggaccaaggcc
tggctcaaggtcaaatgcctcaagcgccaggaattcgtcatcggcggctggcggccatcg
gacaagaagcgcaccttcgcctcgctgctcctgggagcctgggagaatgacaggctcgtc
tatcacggccgcgtcggcaccggcttttccgacaaggaagcggccgccctccagaaagcg
ctcgatgagcgggcacgcaagcagacgcccttcgctaacgccccgcgcgacatctcgcgg
gtagcgcgctgggtcgagccggacctggtggccgagatcgcctatagcgaggtcacgccc
gatggagcgctgcgccatccctccttcatcggcctgcgggaagacaagccggcgcgctct
gttaagatggaagtggccagtgcgccgccggcagaggcggcgtcgtcaaagggcaaagga
gcgcgcgtgcagcacctcgatccggcaaagggcgtggcggcggcggagcgccttggcatc
cggctgaccagcccagatcgcatcgcctatccggggcagggcgtcaccaagggcgaactc
gttgcctattacgatgcggtcgcagacgccatgctgccctacatcaaggatcgtccgctc
agcctggtgcgctgcccgcaagggcgcgccaaggcctgcttctttcaaaagcacgatacc
ggcgggttccctgcggcgatgaagaccgtcgagatcgccgagaaggatggctctaaggaa
agctatttctacgtctcggatctctccggcatcgtcgcggccgtccagatgaacacgctc
gaattccacctttggggttcgcgccgcgacaagatcgaactgcccgagcgcatcatcttc
gatatcgatccggatgaaggcctggggttcgagcacgtccgcgccgccgccatcgacatc
cgcaagggcctggaaagctggggcttggaaagttttgccatgctgacgggcgggaagggc
atccatgtcatcgcgcccatcgcgcgccgcaccgagtggccggaggtcaagctcttctgc
aagaccttcgcccagacgatggccgaggcggaaccggaaaggttcaccgccacgctttcc
aaggagaagcgccagggcaagatgttcatcgactatctgcgcaacgaacgcggcgcgacg
gcgatctcgccctattccactcgctcgcgtgaaggcgctcccgtcgcaacgccggtgacg
tgggcggaactggaaaccatcgagcgcgccaatgccttctcgctcgcccaagcggcggaa
cgggcagcggggcccaacccttggcccgactatttcaagttggaacaggccatcaccaac
gcgatggtcaatgcggtggccggcccagtccgcaagagcgctccgaagcgttag

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