KEGG   Devosia sp. MC521: H4N61_16220
Entry
H4N61_16220       CDS       T08408                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
devo  Devosia sp. MC521
Pathway
devo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:devo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H4N61_16220 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:devo03400]
    H4N61_16220 (ligD)
Enzymes [BR:devo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H4N61_16220 (ligD)
DNA repair and recombination proteins [BR:devo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H4N61_16220 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase
Other DBs
NCBI-ProteinID: QMW62441
UniProt: A0A7G5LK69
LinkDB
Position
complement(3359645..3362290)
AA seq 881 aa
MPKDKLSSYQEKRDFEQTQEPSGRKKIKSSKWLRFVIQKHDATRLHYDLRLELDGVFKSW
AVTRGPSLDPGDKRLAVEVEDHPLEYGDFEGAIPKGQYGGGTVMLWDRGYWIPEEGLSPE
QALNEGELKFTLTGERLHGSFVLVRMKHDRHGGNRSNWLLIKHQDDHSVNANGAAILTEN
STSIASGRTMQQISQSKGRKPKPFMVGQPNVKAAIASQAQQGLEENQLKPKRRSTKPVPS
NAAHTALPGFVEPQLCQVATRPPAQDQWIHEIKFDGYRMQLRINDGTVTLKTRKGFDWTD
KFAAIAEAAGTLPDLIIDGEICALDDQGAPDFSALQAVMSEGKTDDLVFFAFDLLFHGAN
DLRDQGLTDRKKRLELLLKGAGKDPRIRFVDHFETGGDAVLRSACRLSLEGIVSKKANAP
YVSGRTNAWVKSKCRGGHEVVIGAYATTNGKFRSLLVGVNQGDKLVYVGRVGTGFSSAKV
KTLLAELKKLEAKTSPFTGLARPKKGADITWLEPELVAEIEYAGWTAGGKVRQAAFKGLR
QDKPASEVVAEMPTDPKSVELSDPAGAPPRKSRGAAVNRARVDVMGVAISSPSKALWPDA
NDGEEVTKLDLARYFAKVGTWLIDHIKGRPCSVVRTPDGILHQQFFQRHALAGTSNLLEL
IEVTGDKKTYLQIDRVEGLAAIAQIGGTELHPWNSAPGQPEVPGRLVFDLDPGPDVEFST
VVDAALELRSRLDTLGLVSFCKTTGGKGLHVVTPLSIRRGKNPSWTDAKDFARSVCQLMA
ADSPSRYLVKMAKNQRQGRIFLDYLRNDRMATAVAPLSTRARLGATVSMPLDWTQVTLNL
DPTRFTIRTVPKFLKASAPWQSYADGARPLRQAMKRLTKAS
NT seq 2646 nt   +upstreamnt  +downstreamnt
atgcccaaggacaaactttcgagctatcaggaaaaaagggactttgagcagacacaggag
ccttctggtagaaaaaagataaaaagttccaaatggttgcgcttcgtcattcagaaacat
gatgcaacgcggctgcattatgacctgcggcttgaactcgatggcgtcttcaaatcgtgg
gctgtcacacgagggccctcactcgatccaggtgacaagcgtttggcagtcgaagtggaa
gaccatcctctagaatacggggatttcgagggcgcgatccccaaagggcaatatggtggg
ggtacagtaatgctgtgggatcgcggatattggataccggaggagggcctgtccccggag
caagccttgaacgagggagaactcaaattcactcttaccggcgagcgccttcacggcagc
tttgttctagttcgcatgaagcacgaccgccatggggggaatcgatcaaactggcttctg
atcaagcatcaggacgaccattccgtgaatgccaatggggcggcgatcttgacggaaaac
agtacctcgatcgcctcaggcaggactatgcagcagatatcccaaagcaaaggacgcaag
ccgaagccattcatggttgggcaaccgaatgtgaaagctgccatcgcgtcgcaggcacag
cagggtttggaagagaatcagctcaaacccaaacgccgatcaacaaaaccagtcccaagc
aacgcggcccacaccgctctgccgggattcgtcgaaccacagttgtgccaagtagcaacg
cgtccgcccgctcaagaccagtggattcacgagatcaagtttgacggctaccgcatgcag
ctgcgcataaacgatggcactgttacgttgaaaactcgtaaaggttttgactggacagac
aagttcgccgccatcgcagaagcagctggcacgttgccggacctcatcatcgatggagaa
atatgcgcactggacgatcaaggtgctccggatttttccgcacttcaggctgtgatgtcc
gaaggcaaaaccgacgatctggtgttcttcgcctttgatttgcttttccacggagcgaat
gacctgcgtgatcaaggacttacggatcgaaagaagaggctggagttgttgctcaaggga
gccggcaaggaccctagaatacgctttgtggatcatttcgagactggtggagatgctgta
ctgcgttccgcttgccgtctgtcgctcgagggcattgtctcgaaaaaagcaaatgctcct
tatgtatcgggccgaactaacgcctgggtgaagtcaaagtgtcgagggggccatgaagtg
gttatcggtgcctatgccaccacaaacggaaaattccgctctctgctcgttggcgttaat
caaggcgataagcttgtctatgtcggtcgcgtcggtaccggctttagttctgctaaggtc
aagaccctcctagcagaactaaagaaactggaagcaaagacgtcaccatttaccgggctt
gcgcgccctaagaagggtgcggacataacctggcttgaaccagagttggttgctgagatc
gaatacgcgggctggactgctggtggaaaagtccgacaggcggcgttcaaaggcctacgc
caagacaagcctgccagtgaagttgtggcagaaatgcccaccgatcccaaatcagttgag
ctttctgatccagctggtgctccaccgaggaaatctaggggagcggcggttaatcgggct
cgcgtagacgtcatgggggtggcgatttcaagtccgagtaaggctctttggccggacgcc
aacgatggtgaggaagtcacaaaactcgatctcgcgagatactttgcaaaggttgggaca
tggctaattgaccatattaagggacgtccctgctctgttgtccgcacgccggatggcata
cttcaccagcagttcttccagcgccatgcgctggctggaacatccaatctcctcgaactt
atcgaggtcacgggcgataaaaaaacctatctgcagattgatcgtgtagagggattggcc
gccatcgctcaaatcggaggaacagagctgcacccttggaatagcgcacctggccagcct
gaagtaccaggccgtctggtttttgacctagacccggggcccgacgtcgaattttcaacg
gttgttgacgcagccttggaattgcgcagccgcttagacacattaggtcttgtaagcttc
tgcaaaaccaccgggggcaaaggcctgcacgtcgtgacccccttgtccataaggcgaggc
aagaacccatcttggactgacgcaaaagattttgctagaagtgtgtgccaactcatggct
gcagacagtccgagccgctatctagtcaaaatggcgaagaaccagcgccaggggcgcata
tttcttgactatttgcgcaacgaccgcatggccaccgctgttgcacccctctcgacgcgc
gcgcgccttggtgcaacagtatccatgcctctcgattggacccaagtgacgctgaacctt
gatccgacacgcttcactattcgaaccgtaccgaaattcctcaaggcgtcggctccatgg
cagagctatgctgacggcgctcgtccacttaggcaggcgatgaagcgacttacaaaggcg
tcgtag

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