Devosia sp. MC521: H4N61_16220
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Entry
H4N61_16220 CDS
T08408
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
devo
Devosia sp. MC521
Pathway
devo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
devo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H4N61_16220 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
devo03400
]
H4N61_16220 (ligD)
Enzymes [BR:
devo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H4N61_16220 (ligD)
DNA repair and recombination proteins [BR:
devo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H4N61_16220 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QMW62441
UniProt:
A0A7G5LK69
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All DBs
Position
complement(3359645..3362290)
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AA seq
881 aa
AA seq
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MPKDKLSSYQEKRDFEQTQEPSGRKKIKSSKWLRFVIQKHDATRLHYDLRLELDGVFKSW
AVTRGPSLDPGDKRLAVEVEDHPLEYGDFEGAIPKGQYGGGTVMLWDRGYWIPEEGLSPE
QALNEGELKFTLTGERLHGSFVLVRMKHDRHGGNRSNWLLIKHQDDHSVNANGAAILTEN
STSIASGRTMQQISQSKGRKPKPFMVGQPNVKAAIASQAQQGLEENQLKPKRRSTKPVPS
NAAHTALPGFVEPQLCQVATRPPAQDQWIHEIKFDGYRMQLRINDGTVTLKTRKGFDWTD
KFAAIAEAAGTLPDLIIDGEICALDDQGAPDFSALQAVMSEGKTDDLVFFAFDLLFHGAN
DLRDQGLTDRKKRLELLLKGAGKDPRIRFVDHFETGGDAVLRSACRLSLEGIVSKKANAP
YVSGRTNAWVKSKCRGGHEVVIGAYATTNGKFRSLLVGVNQGDKLVYVGRVGTGFSSAKV
KTLLAELKKLEAKTSPFTGLARPKKGADITWLEPELVAEIEYAGWTAGGKVRQAAFKGLR
QDKPASEVVAEMPTDPKSVELSDPAGAPPRKSRGAAVNRARVDVMGVAISSPSKALWPDA
NDGEEVTKLDLARYFAKVGTWLIDHIKGRPCSVVRTPDGILHQQFFQRHALAGTSNLLEL
IEVTGDKKTYLQIDRVEGLAAIAQIGGTELHPWNSAPGQPEVPGRLVFDLDPGPDVEFST
VVDAALELRSRLDTLGLVSFCKTTGGKGLHVVTPLSIRRGKNPSWTDAKDFARSVCQLMA
ADSPSRYLVKMAKNQRQGRIFLDYLRNDRMATAVAPLSTRARLGATVSMPLDWTQVTLNL
DPTRFTIRTVPKFLKASAPWQSYADGARPLRQAMKRLTKAS
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggacaaactttcgagctatcaggaaaaaagggactttgagcagacacaggag
ccttctggtagaaaaaagataaaaagttccaaatggttgcgcttcgtcattcagaaacat
gatgcaacgcggctgcattatgacctgcggcttgaactcgatggcgtcttcaaatcgtgg
gctgtcacacgagggccctcactcgatccaggtgacaagcgtttggcagtcgaagtggaa
gaccatcctctagaatacggggatttcgagggcgcgatccccaaagggcaatatggtggg
ggtacagtaatgctgtgggatcgcggatattggataccggaggagggcctgtccccggag
caagccttgaacgagggagaactcaaattcactcttaccggcgagcgccttcacggcagc
tttgttctagttcgcatgaagcacgaccgccatggggggaatcgatcaaactggcttctg
atcaagcatcaggacgaccattccgtgaatgccaatggggcggcgatcttgacggaaaac
agtacctcgatcgcctcaggcaggactatgcagcagatatcccaaagcaaaggacgcaag
ccgaagccattcatggttgggcaaccgaatgtgaaagctgccatcgcgtcgcaggcacag
cagggtttggaagagaatcagctcaaacccaaacgccgatcaacaaaaccagtcccaagc
aacgcggcccacaccgctctgccgggattcgtcgaaccacagttgtgccaagtagcaacg
cgtccgcccgctcaagaccagtggattcacgagatcaagtttgacggctaccgcatgcag
ctgcgcataaacgatggcactgttacgttgaaaactcgtaaaggttttgactggacagac
aagttcgccgccatcgcagaagcagctggcacgttgccggacctcatcatcgatggagaa
atatgcgcactggacgatcaaggtgctccggatttttccgcacttcaggctgtgatgtcc
gaaggcaaaaccgacgatctggtgttcttcgcctttgatttgcttttccacggagcgaat
gacctgcgtgatcaaggacttacggatcgaaagaagaggctggagttgttgctcaaggga
gccggcaaggaccctagaatacgctttgtggatcatttcgagactggtggagatgctgta
ctgcgttccgcttgccgtctgtcgctcgagggcattgtctcgaaaaaagcaaatgctcct
tatgtatcgggccgaactaacgcctgggtgaagtcaaagtgtcgagggggccatgaagtg
gttatcggtgcctatgccaccacaaacggaaaattccgctctctgctcgttggcgttaat
caaggcgataagcttgtctatgtcggtcgcgtcggtaccggctttagttctgctaaggtc
aagaccctcctagcagaactaaagaaactggaagcaaagacgtcaccatttaccgggctt
gcgcgccctaagaagggtgcggacataacctggcttgaaccagagttggttgctgagatc
gaatacgcgggctggactgctggtggaaaagtccgacaggcggcgttcaaaggcctacgc
caagacaagcctgccagtgaagttgtggcagaaatgcccaccgatcccaaatcagttgag
ctttctgatccagctggtgctccaccgaggaaatctaggggagcggcggttaatcgggct
cgcgtagacgtcatgggggtggcgatttcaagtccgagtaaggctctttggccggacgcc
aacgatggtgaggaagtcacaaaactcgatctcgcgagatactttgcaaaggttgggaca
tggctaattgaccatattaagggacgtccctgctctgttgtccgcacgccggatggcata
cttcaccagcagttcttccagcgccatgcgctggctggaacatccaatctcctcgaactt
atcgaggtcacgggcgataaaaaaacctatctgcagattgatcgtgtagagggattggcc
gccatcgctcaaatcggaggaacagagctgcacccttggaatagcgcacctggccagcct
gaagtaccaggccgtctggtttttgacctagacccggggcccgacgtcgaattttcaacg
gttgttgacgcagccttggaattgcgcagccgcttagacacattaggtcttgtaagcttc
tgcaaaaccaccgggggcaaaggcctgcacgtcgtgacccccttgtccataaggcgaggc
aagaacccatcttggactgacgcaaaagattttgctagaagtgtgtgccaactcatggct
gcagacagtccgagccgctatctagtcaaaatggcgaagaaccagcgccaggggcgcata
tttcttgactatttgcgcaacgaccgcatggccaccgctgttgcacccctctcgacgcgc
gcgcgccttggtgcaacagtatccatgcctctcgattggacccaagtgacgctgaacctt
gatccgacacgcttcactattcgaaccgtaccgaaattcctcaaggcgtcggctccatgg
cagagctatgctgacggcgctcgtccacttaggcaggcgatgaagcgacttacaaaggcg
tcgtag
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