Dactylosporangium fulvum: Dfulv_03845
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Entry
Dfulv_03845 CDS
T08473
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dfu
Dactylosporangium fulvum
Pathway
dfu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Dfulv_03845 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfu03400
]
Dfulv_03845 (ligD)
Enzymes [BR:
dfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Dfulv_03845 (ligD)
DNA repair and recombination proteins [BR:
dfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Dfulv_03845 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Glyco_trans_4_4
Motif
Other DBs
NCBI-ProteinID:
UWP83431
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All DBs
Position
842782..843669
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AA seq
295 aa
AA seq
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MPDRVRVEVDGRQLEISNLDKVLYPQAGFTKGEVIDYYTRVAPTLLPHLAGRPLTRVRYP
NGVDGDSFFEKNAPAGTPDWVRTVRRPVPGSTRKRERIDFIVVEELPTLVWLANLAALEL
HTPQWQVDEEGEVLDPDQLVVDLDPGPPAGLPECFEVALLVRDQLRVDGLTCCPKTSGRK
GMQLVAPLPGDETADEISAYAKAVAERLAQQRPDLVVAKMAKQLRPGKVFLDWSQNNAFK
TTITPYSLRAGATPTVSAPLTWAEVEAGEITAADLTPATVLDRVLRLGDLLERVE
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaccgggtgcgcgtggaggtcgacggccggcagttggagatctccaacctcgac
aaagtgttgtacccgcaggcagggttcaccaagggcgaggtcatcgactactacacccgc
gtcgcgccgaccctgctgccgcatctcgccgggcggccgctcacccgggtccggtacccc
aacggtgtcgacggcgacagcttcttcgagaagaacgcaccggccggcacccccgactgg
gtccgcaccgtccgccggccggtccccggctcgaccaggaagcgcgagcggatcgacttc
atcgtcgtcgaggaactgcccaccctggtctggctggccaacctcgcggccctcgaactg
cacacgccgcagtggcaggtcgacgaggagggggaggtgctcgaccccgaccagctggtc
gtcgacctcgaccccggcccgcccgccggcctgccggagtgcttcgaggtcgcgctcctc
gtccgtgaccagctgcgcgtcgacgggctgacctgctgtccgaagacctccggccgcaag
ggcatgcagttggtcgcgccgctgcccggcgacgagacggccgacgagatcagcgcgtac
gcgaaggcggtcgccgagcggctcgcccagcagcggccggacctggtcgtggcgaagatg
gccaagcagctgcgcccgggcaaggtgttcctcgactggagccagaacaacgcgttcaag
acgacgattacgccgtattccctgcgggccggcgcgacgccgaccgtcagcgcaccgctg
acctgggcggaggtcgaggccggcgagatcaccgccgccgacctgacgccggcgacggtg
ctcgaccgggtcttacggctgggcgatctgctggagcgcgtcgagtag
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