Megalodesulfovibrio gigas: DGI_2418
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Entry
DGI_2418 CDS
T02851
Name
(GenBank) putative RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg02020
Two-component system
dgg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DGI_2418
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DGI_2418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dgg03021
]
DGI_2418
Transcription machinery [BR:
dgg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DGI_2418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AGW14166
UniProt:
T2GDH6
LinkDB
All DBs
Position
complement(2515756..2517183)
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AA seq
475 aa
AA seq
DB search
MALELRQSLKLSQQLVMTPQLQQAIKLLQLSRIELLETVQQELLENPFLEESAQEATPEQ
ACQDAAPVGQERDAVTERDMLKSADWEDYIGDFASTTRQMNPRETEIPEDGLSFEARLTS
SHSLEGHLEWQLRLSCATPRELEIGDAIIGNLGSSGYLQATAEELAAMTSATVDEVEAVL
YKVQRLDPVGVAARTPQECLLLQLELYKMDTDPILVGLVREHLEDLEKKRYKPLARKFKI
SLEELREYLEVIQGLDPMPGASFGSGEPSYVSPDVFVYKLGDEWVVLLNEEGLPRLELST
AYGELPSRSEKERDYLQEKMRSAQWLMKSLYQRQRTLFKVAESVVKYQREFFEHGVTQLK
PLILKDIAEDIGMHESTVSRITTSKYMATPHGTFELKFFFNSALELDDGTQVGSESVKAL
IKRHISAEDVKAPLSDERIAEILKETLHVNIARRTVAKYRMALDIPSSSKRREMF
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggccctggaactcagacaatccctcaagctgagccagcaactggtgatgaccccccag
ttgcagcaagccatcaagctgttgcagctttccagaatagagctgctggagaccgtccag
caggagctgttggaaaatccgtttctggaagaatcagcccaggaagccacgccggagcag
gcctgtcaggatgccgcccccgtgggccaggagcgtgacgccgtcaccgaacgggacatg
ctcaagagtgcggattgggaagattacatcggcgacttcgcctccaccacgcgccagatg
aacccgcgcgaaacggaaattcccgaggacggcctctcgtttgaggctcgtctcacctcc
agccacagcctggaagggcacctggaatggcagttgcggctctcctgcgccacgccgcgg
gagctggagataggggatgccattatcggcaatctcgggtcctccggctatcttcaggcc
accgccgaggagctggccgccatgaccagcgccaccgtggacgaggtggaggccgtgctg
tacaaggtgcagcgcctggaccctgtgggcgtggcagcccgcacgccgcaggaatgcctg
ttgctgcagctggaattgtacaaaatggatacggaccccatcctcgtggggctggtccgg
gagcatctggaagatctggaaaaaaagcgctacaagcctcttgcgcgcaaattcaagatt
tccctggaagaattgcgagagtacctggaggttatccaggggctggatcccatgcccggc
gcgagcttcggatcgggcgagcccagctacgtcagcccggatgtctttgtctacaagctc
ggcgacgagtgggtggtgctgctcaacgaggaaggcctgccccggttggagctgtccaca
gcctatggggagctgccctccagaagcgaaaaggaacgtgattacctgcaggaaaaaatg
cgttccgcccagtggctgatgaaaagtctctaccagcgtcagcgtacgctcttcaaggtg
gcggagagcgtggtcaaataccagcgggagttctttgaacacggtgttacgcagcttaaa
ccgttgattctcaaggatattgctgaagatatcggcatgcatgaatccacggtctcccgc
attaccaccagcaaatacatggccaccccccacggcacctttgagttgaaatttttcttc
aacagcgctctggaactggacgatggcacccaggtgggttcggagagcgtcaaggccctc
atcaagcggcacatcagtgccgaggatgtcaaggcgcccctttccgacgagcgcattgca
gaaatcctcaaagagacgttgcatgtaaacatcgcccgccgtacagtggccaagtaccgt
atggccctggacatcccttcctcgtccaagcgacgggaaatgttctga
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