Dietzia sp. JS16-p6b: CT688_07185
Help
Entry
CT688_07185 CDS
T05397
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
diz
Dietzia sp. JS16-p6b
Pathway
diz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
diz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CT688_07185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
diz03400
]
CT688_07185
DNA repair and recombination proteins [BR:
diz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CT688_07185
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CT688_07185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
RsgA_GTPase
nSTAND1
AAA_22
AAA_21
APS_kinase
AAA_16
AAA_25
NACHT
Viral_helicase1
DnaJ_CXXCXGXG
cobW
ExoX-like_C
Septin
Motif
Other DBs
NCBI-ProteinID:
AVZ39291
LinkDB
All DBs
Position
1594372..1597386
Genome browser
AA seq
1004 aa
AA seq
DB search
MVDRLVVRGAREHNLKGVDIDVPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSS
YARMFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGVPH
CPTCGEVVSRQTPQQIVDQILAGEEGVRFQVLAPVVRTRKGEFVDLFAQLAADGYNRVRV
DGELHTLAEPPTLKKQEKHDIEVVVDRLAAKPSSRQRLTDSVETALGLADGVIVIDYVDL
DETDQARRRRFSEHMACPNGHPIGLDDLEPRAFSFNSPYGACPVCDGLGSHLEVDPDLVI
PDPERSLADGAIAPWSGGQSADYFQQLLSGLADDLGFDLRTPWQDLPAKVRKAVLGGAST
KVRVRYKNRYGRVRTYDAKFEGVMSFLKRRLEQTESESQKERYQGYMREVPCPTCEGTRL
KPEILAVTMTGPGGRERSIADISRMSVADCAQFLDGLELDSRQEMIAGRVLKEIQARMGF
LLDVGLDYLSLDRVAGSLSGGEAQRIRLATQIGSGLAGVLYVLDEPSIGLHQRDNRRLID
TLVRLRDLGNTLLVVEHDEDTIRAADWIVDIGPLAGEHGGRVVHSGDYAGLLASTESLTG
DYLAGRRSIAVPETRRGLNPEKMLHVRGARENNLKNVDVMFPGGVLCAVTGVSGSGKSTL
VNDILATSLANQLNRARQVPGRHSRIDGMESFDKLVQVDQSPIGRTPRSNPATYTGVFDK
IRTLFAATTEAKVRGYKQGRFSFNVKGGRCEACQGDGTLKIEMNFLPDVYVPCEVCQGAR
YNRETLEVHYKGKTIAEVLDMPIEEACEFFEPITSIHRYLKTLSQVGLGYVRLGQSAPTL
SGGEAQRVKLAAELQKRSSGRTVYILDEPTTGLHFEDITKLLLVIQGLVDKGNTVIVIEH
NLDVIKSADWVIDMGPEGGAGGGVVVAEGTPEQVATVPESHTGRFLAQVLPTVQEEPAEG
RRPAGKQAGRAAARTTASKKTVASKAPAKKAAAAKAARKARALR
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggtggaccgtctggtcgtccgcggcgcacgggaacacaacctcaagggcgtggacatc
gacgtcccgcgcgacgccctgatcgtcttcaccggattgtccggctccggcaagtcctcg
ttggcgttcgacacgatcttcgccgaaggtcagcgtcggtacgtcgagtcgctctcctcc
tatgcgcgcatgttcctcgggcagatggacaagccggacgtcgacttcatcgaggggctc
tccccggcggtgtcgatcgaccagaagtccaccaaccggaacccgcggtcgaccgtgggc
acgatcaccgaggtctacgactacctccgtctgctctatgcgcgggcgggtgtgccgcac
tgccccacgtgcggagaggtggtctcgcgtcagacccctcagcagatcgtcgaccagatc
ctcgccggcgaggagggcgtgcggttccaggtcctcgcgccggtcgtgcgcacgaggaag
ggggagttcgtcgacctgttcgcgcagctcgcggccgacgggtacaaccgtgtgcgggtc
gacggtgagctccacaccctcgcggaaccgcccacgctcaagaagcaggagaagcacgac
atcgaggtggtcgtcgaccgactcgccgcgaagccgtcctcgcgacagcgcctcaccgat
tccgtcgagaccgcgttgggcctggcggacggcgtcatcgtgatcgactatgtggacctc
gacgagaccgaccaggcccggcggcgtcggttctccgaacacatggcctgtcccaacggc
catccgatcggcctggacgacctggaaccccgcgcgttctcgttcaactcgccctacggc
gcctgcccggtctgtgacggactcgggtcccacctcgaggtggatcccgacctggtgatc
cccgatccggagcggtcgttggccgacggcgcgatcgcaccgtggtcggggggtcagagc
gccgactacttccagcagctgctctcgggactggccgacgacctgggcttcgacctgcgt
acgccatggcaggacctgcccgccaaggtgcgcaaggcggtgctcggcggggcgtcgacg
aaggtgcgggtgcggtacaagaaccgctacggccgggtccgcacgtacgacgccaagttc
gagggcgtcatgtcgttcctcaagcgccggctggagcagacggagtcggaatcgcagaag
gagcgctaccaggggtatatgcgggaggtcccgtgtcccacctgcgaggggacccgactc
aagccggagatcctcgcggtgaccatgacgggcccaggcgggcgcgagcggtcgatcgcg
gacatctcgcggatgtcggtcgcggactgcgcgcagttcctcgacgggctggaactggac
tcccgccaggagatgatcgccggccgggtcctcaaggagatccaggcccgtatggggttc
ctcctcgacgtgggactcgactacctgtccctggaccgggtggcgggcagtctgtccggt
ggcgaggcccagcggatccggctggccacccagatcgggtccggcctcgccggagtgctg
tacgtcctcgacgaaccctccatcggtctgcaccagcgggacaaccgtcgtctcatcgac
acgctcgtccggttgagggacctggggaacacgcttctcgtggtggagcacgacgaggac
accatccgcgcggccgactggatcgtcgacatcggcccgttggccggcgagcacggggga
cgcgtggtgcactccggggactacgccgggctgctggccagcacggagtcactgacgggt
gactacctggcgggtcggcggtccatcgcggtgcccgagacgcggcgcggactgaacccg
gagaagatgctccacgtacgcggggcccgggagaacaacctcaagaacgtcgacgtgatg
ttccccgggggcgtgctgtgcgctgtcaccggggtgtccgggtccggaaagtccaccctc
gtcaacgacattctcgccacgtccctcgccaaccagctcaaccgggcacgccaggttcca
ggtcggcattcccgcatcgacgggatggagtcgttcgacaaattggtgcaggtggaccag
tcgccgatcgggcgcacgccgcggtccaacccggccacgtacaccggggtgttcgacaag
atccggacgttgttcgcggcgaccaccgaggccaaggtccgcggctacaagcaggggcgg
ttctcgttcaacgtcaagggcgggcgatgcgaggcgtgccagggggacggcaccctcaag
atcgagatgaacttcctgccggacgtctacgtcccgtgcgaggtgtgtcagggcgcccgg
tacaaccgcgagaccctcgaggtccactacaagggcaagaccatcgccgaggtgctcgac
atgccgatcgaggaggcgtgcgagttcttcgagccgatcacgtcgatacaccggtacctc
aagacgctctcccaggtcggactggggtacgtgaggttgggccagtcggcgccgaccctg
tccggtggtgaggcgcagcgggtcaagctcgcggccgagttgcagaagcggtcgagtgga
cggaccgtctacatcctcgacgagcccaccacgggtctgcacttcgaggacatcaccaag
ctcctcctggtgatccaggggctggtcgacaagggcaacaccgtcatcgtgatcgagcac
aatctcgacgtcatcaagagtgccgactgggtgatcgacatggggcccgagggtggggcc
ggtggaggtgtcgtcgtggcggagggcacccccgagcaggtggcgacggtgcccgagagc
cacaccggacgcttcctcgcgcaggttctacccaccgtgcaggaagagcccgcggagggt
cgtcggcccgcggggaagcaggccggcagagccgccgcccgcacgacggccagcaagaag
acggtcgcgagcaaagccccggcgaagaaggccgccgcggccaaggcggcacgcaaggca
cgggcgctgcgctga
DBGET
integrated database retrieval system
