Desulfurococcus amylolyticus 1221n: DKAM_0056
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Entry
DKAM_0056 CDS
T00817
Name
(GenBank) Transcription initiation factor IIB (TFIIB)
KO
K03124
transcription initiation factor TFIIB
Organism
dka
Desulfurococcus amylolyticus 1221n
Pathway
dka03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dka00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DKAM_0056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dka03021
]
DKAM_0056
Transcription machinery [BR:
dka03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
DKAM_0056
Prokaryotic type
Archaeal type
TFB
DKAM_0056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
TF_Zn_Ribbon
Cyclin_C
Sigma70_r4
HTH_Tnp_ISL3
HTH_AsnC-type
DUF188
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
ACL10385
UniProt:
B8D3B4
LinkDB
All DBs
Position
complement(51112..52071)
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AA seq
319 aa
AA seq
DB search
MGVLTMFIDSTASSPESSMDSESKKPKCPQDKIVYDTTHGEYVCQDTGEVIEEKVIDERP
EWRAFTSEERGRRARTGGPVTATVHDMGFATTIDYTDRDAAGRRLTEKKHELVKLRKWQA
RTRIITSVERNLAQAMNELDRLSDILNLPSYVKEEAARIYRNAVEKGIVRGRSIESIIAA
TIYLACREMKVPRSLDEITRHTRVNRKEIARCYRLLLRELHIKVTTTDPVDYVPRIVHGL
GLPGQAVKIAIEIINKAKEQGVTGGKDPAGLAAAAVYIAAEQLGEKRTQKEIAHVAGVTE
VTVRNRYKELAKILGLEYE
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttttaacaatgtttatagattccactgcatcatctcctgagtcatccatggat
agtgagtcaaagaagcctaagtgtcctcaggacaagatagtatatgatacaacacacggg
gaatacgtgtgccaggacaccggcgaggtaatagaggagaaagtgatagatgagaggcct
gaatggagggcttttacatcagaggagaggggtagacgcgcgaggacaggtggcccggtc
acagctacagtccatgacatggggtttgcgacaacgattgattacacagatagggatgca
gcgggtagaagactgacagagaaaaaacatgagctggttaagctaaggaagtggcaggca
agaacgaggataataactagtgttgaaaggaacctagcacaagcaatgaacgagctggat
cggttgtcagatatattgaatctgccctcgtacgttaaggaagaggcggctagaatatat
cgtaatgcagttgaaaaaggaatagttagaggcagaagtattgagagtataatagccgct
acaatatatcttgcatgcagagaaatgaaggtaccacgttcacttgatgagataacaaga
cataccagggtgaacaggaaggagatagccagatgctataggctcctattaagggagcta
catataaaagttactacaaccgatccggtggactacgtccctaggattgtacatggatta
gggcttcccggacaagcagttaaaatagctatcgagataattaataaggcgaaggaacaa
ggtgtcacgggtggaaaggacccagccggattagcagctgcagcagtatacatcgctgct
gaacagctgggagagaagagaactcagaaagagatagcacatgtggcaggggtgacagag
gtaactgtaaggaacaggtataaggaactcgcgaaaatactcggactagagtatgaataa
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