Dokdonella koreensis: I596_1685
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Entry
I596_1685 CDS
T04377
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
dko
Dokdonella koreensis
Pathway
dko02020
Two-component system
dko02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dko00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
I596_1685
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I596_1685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dko03021
]
I596_1685
Transcription machinery [BR:
dko03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I596_1685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
HTH_IclR
HTH_12
Motif
Other DBs
NCBI-ProteinID:
ANB17709
UniProt:
A0A160DTL3
LinkDB
All DBs
Position
complement(1937450..1938787)
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AA seq
445 aa
AA seq
DB search
MELELELAVALESNPLLDMTDGDADFDESGESEPADVGETDASPAESASESSADDDGPLD
LSLEHNEYRGTPTDEDGMEPQDAEAEDLRDHLLWQLNLTPMSPRDRTIATAIIEAVDDDG
YLTEPGEALAQSVSQLFSVSADEVEAVRHRVQRFDPLGVASRTLRECLLVQLEACSRDTP
AIALAEVLVDQHLDQLARNDRGKLCQKLRASADELDGAITLIRSLNPKPGAGHSAAPAEY
VAPDAYAIKHNGRWQVSLSPGCQPRLSINQHYAALIARAKRDDANYLRSQLQEARWLIKS
LQTRADTLLKVATAIVRAQEAYLEFGPEAMRPLVLKDVADEIGMHESTVSRVTTRKYLHT
PRGTFEFKYFFSSGVTTIDGGAASATAIQAMIRKLVADERPERPLSDQALTSELNNRGIN
VARRTVAKYREAMNIPSSNDRARLS
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggaactggagctggagctggccgtcgcgctggagtccaatccgctgctggacatgacc
gacggcgacgcggacttcgacgaatcgggcgagtccgagccggccgacgtcggcgagacc
gacgcctccccggccgaatcggccagcgaatccagcgccgacgacgacggcccgctcgac
ctctcgctcgagcacaacgaataccgcggaacgccgaccgacgaggacggcatggaaccg
caggacgcggaagccgaggacctgcgcgaccacctgctctggcagctcaacctgacgccg
atgtcgccgcgggaccgcaccatcgccaccgcgatcatcgaggcggtggacgacgacggc
tacctgaccgagccgggcgaggcgctggcccagagcgtctcgcagctgttcagtgtctcc
gccgacgaagtggaggcggtccggcatcgcgtgcagcgcttcgatccgctcggcgtcgcc
agccgtacgctgcgcgaatgcctgctggtacagctggaagcctgcagccgcgacacgccg
gcgatcgcgctggccgaggtgctggtcgaccagcacctggaccagctggcgcgcaacgac
cgcggcaagctgtgccagaagctgcgcgccagcgccgacgagctcgacggcgcgatcacg
ctgatccgctcgctcaatcccaagcccggcgccggccattcggcggcgccggccgagtac
gtggcgcccgacgcctatgcgatcaagcacaacggccgctggcaggtctcgctgtcgccc
ggctgccagccgcggctgtcgatcaaccagcactacgcggccctgatcgcacgcgccaag
cgcgacgacgccaactacctgcgcagccagctccaggaagcgcgctggctgatcaagagc
ctgcagacgcgggccgacacgctgctgaaggtcgccaccgcgatcgtgcgcgcgcaggag
gcctacctggagttcgggcccgaggcgatgcgcccgctggtgctcaaggacgtggccgac
gagatcggcatgcacgagtcgacggtcagccgcgtgaccacgcgcaagtacctgcacacc
ccgcgcggcacgttcgagttcaagtacttcttctccagcggcgtgaccacgatcgacggc
ggcgcggcctcggccacggcgatccaggcgatgatccgcaagctggtggccgacgagcgg
cccgaacggccgttgtccgaccaggccctgacctccgaactgaacaaccggggcatcaac
gtcgcccggcgcacggtcgccaagtaccgcgaggcgatgaacatcccctcttccaacgac
cgcgcacgcctgagttga
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