Desulfonema limicola: dnl_10780
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Entry
dnl_10780 CDS
T07101
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dli
Desulfonema limicola
Pathway
dli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
dnl_10780 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dli03021
]
dnl_10780 (rpoB)
03400 DNA repair and recombination proteins [BR:
dli03400
]
dnl_10780 (rpoB)
Enzymes [BR:
dli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
dnl_10780 (rpoB)
Transcription machinery [BR:
dli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
dnl_10780 (rpoB)
DNA repair and recombination proteins [BR:
dli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
dnl_10780 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QTA78836
UniProt:
A0A975GF26
LinkDB
All DBs
Position
1194976..1199106
Genome browser
AA seq
1376 aa
AA seq
DB search
MSGKPLKGKRIRKNFGKIRKIIDIPDLIGMQRGSYSRFLQLDVPPEKREDIGLQAVFKSV
FPIKDFTGSASLEFVSYRFAEIKHSVEECIQRGMTYELPVRITVRLVVYDVDKETGISNI
RDIKEQEIYFGTIPLMTEKGTFIVNGTERVVVSQLHRSSGVFFDHDKGKTHSSGKVIYSS
RIIPVRGSWIDMEVDPKDIVHIRIDRRRKFPVTLLFKSFGYTTEDLLAYFYDVEKILIRG
NSFFKVFKDKLFKGRRATQDIVDIVTGEVIVKKGRLFTQKAIRQIKAAGMDVIPIGLEDV
LGSTFAHPVLDSETGEVIAKANDQIDENLLARIIELGITEFDLLFIDGVTSSDSIRKTLL
LDKVDTKEEALIEIYRRLRPGNPATPEVAQDFIDHLFFKSAYYDLSGVGRMKINLRLGVD
TPVDVRTLRKEDILLTTRTLVELRDTQGVVDDIDHLGNRRVRAVGELLENQYRIGLVRME
RAIKERMSLQEVDALMPHDLVNPKPVSAVVKEFFGTSQLSQFMDQTNPLSETTHKRRLSA
LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLSTYARVNDYGFIETPYR
IVENVTVSDKVRFLSAFEEKDHPIAQANAPVNEKGEYINPKVTSRVMGEFEMVDRENIEL
MDISPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLMESRAPLVGTGIEGVVAKDS
GVTIVARRDATVVDVDASRILLKYKFTEPTEEKLVAPINLLKFVRSNQNTCFNQRPIVKK
GQEVKAGEIIADGPATENGELALGKNVMVAFMPWGGYNFEDSILVSERLVRDGVYTSVHI
EEFELVARDTKLGKEEITRDIPNVGDEALKDLDDSGIVRLGAEVSSGDILVGKVTPKGET
QLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGIVIDAKVFSRRGIDKDERTRWIEDEEI
ACFEKDKDDELYVLEITVRERLEELLAGQKCLVSLKKHKNIIIPKDIIITREQIAGIKPI
SDLEGISLENSDITDQVNELLDIYKIQCEQCRAAFEHKVSRFEKGDDLPPGVIKMVKIYV
AMKRKLSVGDKMAGRHGNKGVVSRILPQEDMPYFEDGTPVDMVLNPLGVPSRMNVGQILE
IHLGRAARGLGDQIRNLLEQKKYHDLRQKLIAIFGKPTDQLRSPAPGPKVPDFETMDDES
LAEYAAYYKEGVHMATPVFDGAKEDEIRSLLAEAGLSITAQATLYDGRTGEAFKGDITVG
AMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGSAYALQ
EFLTVKSDDMAGRTRMYEKIVKGQNVLEPGIPESFKVLTKELQSLGLDITLMENQD
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaaagcctttgaaaggtaaacgcataagaaaaaattttggcaaaatacggaag
atcattgatattcctgatcttattggaatgcaaagaggctcctatagccgtttcttacaa
ctggatgttcctccggaaaaacgtgaagatatcggtcttcaggccgtgttcaaatccgtc
tttcccataaaagattttacaggaagtgcctctcttgagtttgtttcttacagatttgca
gaaataaaacacagtgtggaagagtgcatacagcggggcatgacatatgaactgcctgtg
cgtataactgtcaggctggttgtttatgatgtagacaaggaaacaggtatctcaaatata
agagatattaaggaacaggaaatttattttggaaccatccctttaatgactgaaaaagga
acttttatagtcaatggcactgaaagggttgttgtaagccagcttcatcgttcttcaggt
gtattttttgatcatgacaaaggaaaaacccactccagcgggaaagtaatttattcctcc
agaattataccggttcgcgggtcatggatagatatggaggttgaccccaaagatattgta
cacatccgcatagaccgccgcaggaaatttccggttacacttttatttaaatcctttgga
tatactactgaggatcttctggcatatttttatgatgttgaaaagatacttatcaggggt
aattctttttttaaagtattcaaagataaattgtttaaaggccgcagagctactcaagat
attgtagatattgtaacaggtgaagtgatagttaaaaaaggccgcctttttacacaaaaa
gcaattcgtcagataaaagctgctggcatggatgtgattcctattggtcttgaagatgtt
ttaggcagcacctttgctcatcctgtacttgatagcgagacaggtgaagtaattgcaaaa
gcaaacgatcagatagatgaaaatcttttagccaggataattgaacttggaattacagaa
tttgatctgctttttatagatggtgttacttccagtgattctattcggaaaacactgctg
cttgataaggttgatacaaaagaggaagccttaattgagatatatcgccgccttcgtccg
ggtaatcctgctactcctgaagttgctcaggattttatagatcatttattttttaaatct
gcctattatgatctgtcaggcgttggacgtatgaaaattaatctgcgtcttggagttgat
actcctgtggatgtcaggactctgcggaaagaagatattcttcttacaaccaggacctta
gttgagttaagggatactcagggcgtagttgatgatattgatcatttaggcaatcggcgt
gtaagggctgttggagaactgctggaaaatcagtacaggattgggcttgtaagaatggaa
agagcaataaaagaacgtatgagtcttcaggaagtagatgctcttatgccccatgacctg
gttaatcccaagcctgtatctgctgttgtcaaagagttttttggaacaagtcagctgtct
cagttcatggatcagacaaatcctttatctgaaactacccataagagacggctctctgct
ttggggcctggaggcctgacccgtgaaagagctggttttgaggtgagggatgttcaccct
tcccattacgggagaatatgtcctattgaaacacctgaagggcctaatatcggactaatt
gtttctctaagtacttatgcccgggttaatgattatggttttatagaaactccgtacaga
attgttgaaaatgttacagtttcagacaaagtccgctttttaagtgcttttgaagaaaaa
gaccatcctattgcccaggctaatgcacctgtaaatgaaaaaggagaatatattaatccc
aaggtaacatcacgggttatgggtgagtttgagatggtggatcgtgaaaatatcgaactc
atggatatttctcccaaccagctggtaagtgtatctgcgtctttgattccttttctggaa
aatgatgatgccaaccgtgctcttatgggatccaatatgcagcgtcaggctgtgcctctt
atggaaagcagggcacctcttgtaggaaccggcattgaaggggttgtagctaaggattca
ggggttacaattgtagccaggcgggatgcaactgtggtggatgttgatgcttcccgcata
ctgctgaaatataaatttacagagccaactgaagaaaaactggttgcacctattaatttg
ttaaaattcgtaagatcaaatcaaaatacctgttttaatcaacggcctattgtaaaaaaa
ggtcaggaagtaaaggcaggagagattattgcagacggccctgctactgaaaatggagaa
ctggctcttggcaaaaatgtcatggtggcttttatgccctggggagggtataattttgaa
gattcaatcctggtaagtgaacgcctggttcgtgatggagtttatacatctgtgcatatt
gaagaatttgagcttgttgccagggataccaaactgggtaaagaggaaattacaagagat
ataccaaatgttggggatgaggctcttaaggatttggatgattcaggtatagtacgtctt
ggagcagaagtcagctcaggtgatattcttgtgggcaaggttactccaaagggtgaaacc
cagctttcccctgaagaaaagcttcttcgtgcaatatttggtgaaaaagcaggagatgta
aaagatacctctcttagagtgccgcctggggttgaaggtattgttatagatgccaaggtt
ttcagccgaaggggtattgacaaggatgaacggaccagatggattgaagatgaagagatt
gcctgttttgaaaaagataaagacgatgaattatatgtattggaaataactgttcgtgaa
cgtttagaagaattgctggcaggtcagaaatgtctggtatctttaaaaaaacataaaaac
attattattccaaaagatattataattacaagggagcagattgcaggcataaaaccaatc
tctgatctggaaggtatttctctggagaattctgatataacagaccaggtaaatgaattg
ctggatatttacaaaattcagtgcgagcagtgccgtgcagcttttgaacacaaggtcagc
cggtttgaaaaaggggatgatttgccgccaggcgtaattaagatggttaagatatatgta
gccatgaaaagaaaactttctgttggagataaaatggctggccgtcatggaaataaaggt
gttgtatccagaattctgccccaggaagatatgccgtattttgaagacgggactcctgtg
gatatggttcttaatcctttgggggtgccttcacgcatgaatgtgggccagatactggaa
attcatctgggacgtgctgccagaggcttgggagaccagatacgcaacctgcttgaacaa
aaaaaatatcatgatctcaggcaaaaactaattgctatttttggcaagcctacagatcag
cttcgatctcctgctccgggtccaaaggtgcctgactttgaaaccatggatgatgaaagt
cttgctgaatatgcagcgtattataaagaaggggttcatatggctacacctgtttttgac
ggggctaaggaagatgagattcgcagcctgcttgctgaagctggactcagcattacggcc
caggcaacattgtatgacggcagaacaggcgaagcttttaagggggatattactgtaggg
gctatgtatatgttaaaacttcaccaccttgttgatgataaaatacatgcccgttctatt
ggtccctattctcttgttacacagcagccactgggaggtaaagcccagtttggaggccag
cgtctgggagaaatggaagtgtgggctatggaagcttatggttctgcatatgccctgcaa
gaatttttaactgtaaaatctgatgatatggccggaaggacccgaatgtacgagaagatt
gttaaagggcagaatgtcctggagccgggcatacccgaatcctttaaggtcttgacaaaa
gaactccagagtctgggactggatattacccttatggaaaatcaagactga
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