Drosophila navojoa: 108651428
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Entry
108651428 CDS
T05898
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
dnv
Drosophila navojoa
Pathway
dnv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108651428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dnv03400
]
108651428
DNA repair and recombination proteins [BR:
dnv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108651428
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
DUF5305
TcdB_toxin_midC
zf-DNA_Pol
Motif
Other DBs
NCBI-GeneID:
108651428
NCBI-ProteinID:
XP_017956589
UniProt:
A0A484BC61
LinkDB
All DBs
Position
Unknown
AA seq
1192 aa
AA seq
DB search
MSKKLNTSAGGTPKNTLFNYFAKSPVVDKKKLAPSNGNNGAELQKENLQNGNIKEVKKES
KPVARRKLPTATEDSDQEEEIGKGKRKRIALPESESEEEYESKSEPDFSDDGSDYQPDAK
ESTFSGDSASGEEDDDISEPGTEDEPTPKKQRKKSAKNFLNNNNNEEPASKKAKIETPAL
VAGGTFMEKLQQLQSNAKKDAAYDEIVTTTSNLDEPTVWPHQKLDFLQPDKIKDKAGRRP
DHPEYDKSTLHVPEKFLNTLSPAMRQWWVLKADNFDCVLFFKVGKFYELYHGDADVGVNE
LGFTYMRGEFAHSGFPEISFDKMSSILVDRGYKVARVEQTETPDMMTERCKRIKSTKYDK
VVAREICQITDRGTQVFGSQCAIGPNHQPNYMLAIVEQDEGTSSKYGICFIDTSIGDFHV
GEFDDDKSCSRLLTLISHNMPVLLLHEKAALSSRTQQILRTVLGGIQKEQLPGAGSQLCS
AEKTLKLLAERYYAGTGNEDNWPLVLRTMQSDTDHLGLTPAEPYKLALKALGQCIHYIAK
CKLEPKVLPMARYQLYVPPDEQQEETAKPKLTSAPLQRSHMVLDATTLSNLRIVGEEHSL
QSTLDHCCTKFGKRLLHHWLCAPSCDLTVLRERQEAIGELLSQPDELQQLRALLAPMPDF
ERHLAQIHLFGNKFISQTEHPDSRAILFEEKLYNKQKLRSFMSILKGFETLMQLPEMFQR
CETTLLRRLTQLSSNGGNYPDLSKQLKFFENAFDHEAAAKAGVVAPQPGMDADYDEVQQR
IAEVEERLQAYLKEQERHFGCRVTYFGSDKKRYQLEVPETHAHKANKTYALEGQVKGKKP
ARRYITTETKAMLKDMQQAEDARNAVLKDLARRLFEKFSNHYEQWKQCIDCVATLDVLAG
LAEYARQQLVICVPELVSGQAQPFIELEEGYHPCANPSTYIPNGLQLGTETEAPLSLLTG
PNMGGKSTLMRQLGLLVIMAQIGAHIPAASCRMSLVDRIFTRLGAQDDILAGHSTFLVEL
NETSLILKHATPNSLVLLDELGRGTATYDGTAIAASVVNFLANLKCRTLFSTHYHNLIDF
FHMDKRITLGHMACMVENEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPHGIIK
RAYELSKKVEAIALQRKITAKIVTATALGDNKKHERLNNLKDLLMQLKMCHV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaaactaaacactagtgcaggtggtacgcccaagaatacgctgttcaactac
tttgccaaatcgccagtcgttgacaaaaagaaactagcgccgagcaatggtaacaatgga
gctgagctccaaaaagagaatctccagaatgggaatattaaggaagtgaaaaaagaatcc
aagccagttgccagacgtaaattgccaacagctacggaagacagcgaccaggaggaggag
attggcaaaggtaaacgtaagcgcattgcattacccgaatcagagagcgaggaggaatac
gaatccaaatcggagccagacttttccgatgatggctcagactatcagcccgatgccaag
gagtctaccttcagcggagatagtgccagcggtgaagaagatgatgatattagtgaacct
ggcactgaagacgagcctacacccaagaagcaacgcaagaagtccgcaaaaaactttctt
aacaacaataataatgaagagccagctagtaagaaggctaagattgagacgccagccttg
gttgcaggcggcaccttcatggaaaagctgcagcagctgcaaagtaatgccaaaaaggat
gctgcttacgatgagatcgtgaccaccacatcgaatctggacgagcccactgtctggcca
catcagaagctggacttcttgcagccggacaagatcaaggacaaggctggccggcgacca
gaccatcccgagtacgacaagagcacattgcatgtgcccgagaagttcctcaatacgctg
tcgccggccatgcgccaatggtgggtcctaaaggcagacaactttgactgcgtgctattc
ttcaaggtgggcaagttctatgagctgtatcacggcgatgccgatgtgggcgtcaatgag
ctgggctttacctacatgcgcggcgaattcgcgcactcgggctttccggaaatctctttt
gataagatgtcctccatactcgtagacagaggctataaggtcgcccgtgtggagcaaacg
gagacaccggacatgatgacagagcgttgcaagcgcatcaagtccactaaatacgacaag
gttgtggctcgcgagatctgtcagatcacagatcgaggcactcaagtatttggctcgcag
tgcgccattggccccaatcatcagcccaactatatgctagccatagtggagcaggatgaa
ggcaccagcagcaaatatggcatttgcttcatagacacctccattggtgatttccatgtg
ggtgaatttgacgatgacaagagctgctctcgcctcttgacactaatctcccacaacatg
cccgtgctgttgctccatgagaaggctgcgcttagctctcgcactcaacagattctacgc
actgttctgggcggcatacagaaggagcagctgccgggagctggcagtcagctctgcagc
gcagagaagacgctgaagctgctggcggagcgctactatgctggcactggcaacgaggac
aactggccgctggtgttgcgcaccatgcagtcggacacggatcacttgggtctcacgcct
gcagagccctataagttggcacttaaagctttgggtcaatgcattcactacatagccaag
tgtaagctggagcccaaggtgctgcctatggcgcgctatcagttgtatgtgccgcccgat
gaacagcaggaggagacggcgaagccaaaattaacctctgcaccgctgcagcgctcgcac
atggtcttggatgcaaccacattgtccaatttgcgcattgttggcgaggagcactcgttg
cagtccacgttggaccactgctgcaccaagtttggaaagcggctgctgcaccattggctc
tgcgcgcccagctgcgatttgactgtgttgcgcgagcggcaggaggcgattggcgagctg
ctgagccagccggatgagctgcagcagctgcgcgccttgctggcgcctatgccggacttt
gagcggcatttggctcagattcatttgtttggcaacaaattcataagccaaacggagcat
ccagactccagggccatacttttcgaggagaagctctacaataaacaaaagctgcgcagt
tttatgagcatcctcaagggatttgagacattgatgcagttgccagagatgttccaacga
tgtgaaacgacgctactgaggcgcttgactcagctgtcatccaatgggggcaactatccc
gacctcagcaagcagctgaagttctttgagaacgccttcgaccacgaggcagctgccaag
gcgggcgtcgtcgccccgcagccgggcatggacgcggactacgatgaggtgcagcagcgc
atagctgaggtcgaggagcgtttgcaggcctatttgaaggagcaagagcgtcactttggc
tgtcgcgttacctactttggctccgacaagaagcgctaccagttagaggtgcccgaaaca
catgcccacaaggccaacaagacgtatgcgctggagggccaggtgaagggtaagaagcca
gctcgccgctacatcactacggagaccaaggcgatgctgaaggacatgcagcaggccgaa
gatgcccgcaatgctgtactcaaggacttggcgcgtcgcctctttgagaagttctccaat
cactacgaacagtggaagcagtgcatcgactgtgtggccacgttggatgtgctcgccggt
ctggctgaatatgcgcgccagcagctggtcatctgtgtgccagagctcgtgtcgggacag
gctcagcccttcattgaactagaggagggctatcatccatgcgccaatccatctacatat
atacccaacggcctgcagcttggcacagagacggaggcccccctgtcgttgctcactggc
ccaaatatgggcggcaagagcacattgatgcggcagctcggcttgctggtcatcatggca
caaattggtgctcacattcctgcggccagctgtcggatgtcgcttgtggatcgtattttc
actaggctgggcgctcaggatgacatcctggctgggcacagcacgttcctcgtggagctg
aatgaaacatcgcttatacttaagcatgccacaccgaattccttagtgctgctcgatgag
ttgggacgcggcacggccacatatgacggcaccgccattgcagcgtctgtggtgaacttt
ttggccaatctgaagtgccgcaccttgttctccacgcactaccacaatctgattgatttc
ttccacatggacaagcgcattaccctgggccatatggcctgcatggttgagaacgaggac
aatgcagatcccacccaggagacggtcaccttcttatacaaatacacagcgggcgcctgt
cccaagtcgtacggcttcaatgcagccaagctggcgggcatgccacatggcattattaaa
cgcgcttacgagctatccaagaaagttgaagcaattgcactgcaacgcaaaatcacagcg
aaaattgtgacagcaacggcacttggagataacaaaaagcacgagagacttaacaacttg
aaagatttgcttatgcagctaaaaatgtgccatgtgtga
DBGET
integrated database retrieval system
