KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os04t0117600-01
Entry
Os04t0117600-01   CDS       T02163                                 
Symbol
Os04g0117600
Name
(RAP-DB) Similar to H0613H07.1 protein.
  KO
K05544  tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dosa03016]
    Os04t0117600-01 (Os04g0117600)
Enzymes [BR:dosa01000]
 1. Oxidoreductases
  1.3  Acting on the CH-CH group of donors
   1.3.1  With NAD+ or NADP+ as acceptor
    1.3.1.89  tRNA-dihydrouridine47 synthase [NAD(P)+]
     Os04t0117600-01 (Os04g0117600)
Transfer RNA biogenesis [BR:dosa03016]
 Eukaryotic type
  tRNA modification factors
   Dihydorouridine synthases
    Os04t0117600-01 (Os04g0117600)
SSDB
Motif
Pfam: Dus zf-CCCH_4 zf-CCCH zf_CCCH_4 DEAD_2 zf-CCCH_2
Other DBs
RAP-DB: Os04t0117600-01
LinkDB
Position
chr04:join(1046927..1047211,1047865..1047981,1048055..1048285,1051103..1051358,1051454..1051710,1051881..1052153,1052520..1052801,1052948..1053068,1053254..1053423,1053516..1053614)
AA seq 696 aa
MPHCLLTAPQPWPPPPPPPPRRLPPTRRTPPRPLPPLRGPARRSWSPVQWPPSSPPSSAR
PLSATPPKDEGKANGGGAVVAEKKSKRQLKRERKQEQKSSSHLCIEVGKSGNVSSCKYGD
SCRFSHDIDAYLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGNLSEKHEI
NALNKDIQKLLWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGNDDENK
EPLCNPPVNAECDSTLCEELDRSEGEPLIDNSIPCVEPRPTKKSKVESDEIDKHGAGTLN
TNTESEDPNLSNGLEPSNNSSSCRTDLITTPHLREKKIIDFREKLYLAPLTTVGNLPFRR
LCKTLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELVD
NECSVDFIDINMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFE
GRNRADSIVSDIYDWGASAITVHGRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGNGDVF
SFTDWNKHVSGCSKISTSMIARGALIKPWIFTEVKEQRHWDITSGERFNILKDFVSFGLE
HWGSDSKGVETTRYFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPSYCGRDDLETLMISDS
AADWIRISEMLLGKVPEGFTFTPKHKSNAYDRAENG
NT seq 2091 nt   +upstreamnt  +downstreamnt
atgcctcattgcctcctcaccgcgccgcaaccatggccgccaccgccgccgccgccgccg
cggcgcctcccgccgacccgccggactcctccccggccgcttcctcccctccgaggccca
gcccggaggagctggtcgcccgtgcagtggcccccgtcaagcccgccttcctccgcccgc
cccctgtccgcgacgccccccaaggatgagggcaaggccaacggcggcggcgcggtggtc
gcggagaagaagtccaagcgccagctcaagcgcgagcgcaagcaggaacagaaatcttca
tcacatctttgtatcgaagtagggaaaagtggaaatgtgagctcttgcaaatatggtgat
tcttgccgtttcagccatgacatagatgcctatttggctcagaaaccagctgaccttgag
ggcacgtgcccatttaccaatctggaccagttgtgtccatatggactaacttgtcgattt
ttgggtacacataaggacatccatgcagcttctggaaatctttcagagaaacatgagata
aatgctttaaacaaagacattcaaaagctcttatggaagaacaaatataagttccccaag
gccagtgcacagatcaagcttcttggtcttaaggaagtcattaagagcaaaccggatgct
gcaaatgatgataagaaggttaatcatgataatctagacgggaatgatgatgaaaataaa
gaacctctttgcaatcctcctgtaaatgcggaatgtgattctactttgtgtgaagaattg
gatagatcagagggagaacctttgattgataactcaattccatgtgttgaaccaaggcca
acaaagaagtcaaaggttgaaagtgatgaaattgacaaacatggagcgggtactctcaac
actaacacagaatctgaagatcctaatttgagtaatggattggaaccctcaaataactca
agttcttgtagaactgacctaatcacaacacctcatttacgtgaaaagaagataatagat
tttcgggagaagttgtaccttgctcccttgactactgtcgggaatctgccttttcggaga
ctctgcaaaaccttgggagctgatattacttgtggagaaatggccatgtgcacaaatctt
ttacagggacaagcttcagagtgggctttgctgcgacggcattcatcagaggatttgttt
ggggtgcaaatttgtggagcctatccagatacagtagcacgaaccgttgaacttgtggat
aacgaatgttcagttgatttcatagacataaatatggggtgcccaattgatattgttgtc
aacaaaggtgctggatcatcattgctaacaaaacctatgaggatcaaaagtattgtacaa
gcagcatccactgttactgaaaaacctttaactgttaaggtaagaactgctttctttgag
ggaaggaaccgtgctgattctatagtttccgacatctatgactggggtgcgtcagccata
acagtacatggtcgatcccggcaacagcgctacagcaaacttgctgattgggattatatt
taccagtgtgcccagaaagcccctgaccagttgcatgtcgttggaaatggtgatgtattc
tcttttactgactggaacaaacatgtttcaggctgctctaaaatatcgacaagcatgatt
gctcgaggtgcactcataaagccttggatatttactgaggttaaagaacaaaggcactgg
gatattacatctggcgagagattcaatattcttaaagattttgtgagttttggtctggaa
cactggggttccgattccaaaggtgttgaaacaacacgctattttttactagaatggcta
agctacacctgccgctacataccggttggcctgttggatgtgatcccgcaacgtttgaac
tggaggcccccaagctactgtggccgtgatgatcttgaaaccctaatgatctctgattca
gcagctgactggatcaggatctcagagatgttgcttggcaaagttccagaagggtttacg
tttacacccaagcacaaatccaatgcttatgatcgagctgaaaacggctaa

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