KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os05t0364600-01
Entry
Os05t0364600-01   CDS       T02163                                 
Symbol
Os05g0364600
Name
(RAP-DB) Similar to pre-mRNA-splicing factor SF2.
  KO
K12890  serine/arginine-rich splicing factor 1
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Os05t0364600-01 (Os05g0364600)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dosa03041]
    Os05t0364600-01 (Os05g0364600)
Spliceosome [BR:dosa03041]
 Common components
  Common spliceosomal components
   SR proteins
    Os05t0364600-01 (Os05g0364600)
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_7 RRM_3 Nup35_RRM_2
Other DBs
RAP-DB: Os05t0364600-01
LinkDB
Position
chr05:join(17446139..17446208,17446605..17446696,17448138..17448203,17449666..17449740,17449889..17449988,17450070..17450116,17450188..17450245,17450412..17450461,17450668..17450724,17450812..17450954,17451044..17451085,17451334..17451375,17452490..17452523,17452593..17452661,17452753..17452767)
AA seq 319 aa
SFSSPPPPPPPPPPPPRRRRRVAGTMSRRNSRTIYVGNLPGDIREREVEDLFYKYGRIVD
IDLKIPPRPPGYAFVEFEDPRDAQDAIYGRHGYDFDGHRLRVELAHGGRGPSFDRSSSYS
SAGRRGAAKRTDYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNY
EDMKQAIRKLDDSEFRNAFSRAYIRVREYDSAKRSRSRSRGRSHSRSISRSRSRSRSISR
SRSRSYSRSRSPRSRSASRSHSPVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSAS
KSPVKSRSLSRSPSPVKSE
NT seq 960 nt   +upstreamnt  +downstreamnt
agcttctcgagccctcctcctccgccgccgccgccgccgcctccgcctcgccgccggcgc
agagtcgcaggaacgatgagccgacgcaacagccgcaccatctatgtgggcaatctcccc
ggagacattcgcgagagggaagtggaggatctcttctataagtatggccgtattgtggat
attgacttgaaaattcctccaaggcctcctggttatgcttttgttgagtttgaagaccct
cgtgatgcacaagatgcaatttatggccgtcatggatatgactttgatggccacaggttg
cgggtggagttagctcatggtggcagaggcccttcttttgatcgatcaagtagctatagc
agtgctgggcgccgtggtgccgctaaacgtactgattaccgagttatggttactggatta
ccttcgtcagcatcatggcaagacctcaaggatcatatgaggcgagctggtgatgtctgt
ttctctgatgtttaccgtgagggtggagcaactattggaattgttgattataccaactat
gaggatatgaaacaagcgataagaaagcttgatgactcagagttccgtaatgcattttca
cgggcatatatcagggtgagggagtatgattctgctaagcgcagccgctctcgttccaga
ggtagaagccacagccgctctatctccagaagcagaagccgcagccgctcgatctccaga
agcagaagccgcagttatagcagaagcaggagtccaagatctaggtctgcttctcggtct
cactcacctgtgaaagaaagatctaggtcggcttcacagtctcgctcacctgtgaaggaa
agatcaccatcaagatccccaccccctgctacttctcctcctcgtgaaaagtcagcaagc
aagagccctgtcaagagcagaagtttatcccgatccccatctcctgtgaaatctgagtga

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