Pseudodesulfovibrio piezophilus: BN4_11067
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Entry
BN4_11067 CDS
T02481
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dpi
Pseudodesulfovibrio piezophilus
Pathway
dpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN4_11067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpi03019
]
BN4_11067
03009 Ribosome biogenesis [BR:
dpi03009
]
BN4_11067
Enzymes [BR:
dpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN4_11067
Messenger RNA biogenesis [BR:
dpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN4_11067
Ribosome biogenesis [BR:
dpi03009
]
Prokaryotic type
rRNA helicases
BN4_11067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CCH48304
UniProt:
M1WPE4
LinkDB
All DBs
Position
1120906..1122651
Genome browser
AA seq
581 aa
AA seq
DB search
MPLRGLPAQGIDRFRLARSHFFYMSHDKDTMTTFQELGLSAGTLEALESKGFESPTPIQE
RTIPLLLQGNIDIVGQAQTGTGKTAAFGLPIIETVQEKGGRVQALILTPTRELAIQVADE
INSLKGNKRIRIIPVYGGQAIHMQFKALKRGVDVIVGTPGRIMDHMKRGTLKLDQLDFFV
LDEADEMCNMGFVDDVREILASANTDRRTLLFSATMPREVMRIATEFMRDYETVTVKTTK
NDSPLIRHIFHEMADSDRFEALCRVIDAQPEFYGLVFTRTRADADTVAERLNERGYPAEP
IHGEISQNRREDILNRFRRRRATILVATDVAARGIDVPDLTHVVNFALPQDPPTFVHRTG
RTGRAGKEGIAITLITPNEFRRLMYITKSSGIEISKEKLPRIQDVIYSKKSRMVTKLESI
MAEDDHSAYQPMAKELMSEQDPAEIIAALLRHTFGDELVESSYKEIDTITQGNRGRADLI
CALGRSHGMNPKEFVDFISKTANIKQWSIQHVRVQGNRTTFTVPGNEANKVIDLINSRDG
RQLITRGENNSRPPSRRDFKKTGGPRYGKRPFKKPYKPKKD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgcgcggattgcctgcgcaggggattgatcgttttaggcttgcgcgctctcat
tttttttacatgtcacacgacaaggatactatgactactttccaggaactaggcctgtcc
gcagggactctcgaggccttggaatccaaggggtttgagagccccacccccattcaggag
cgcaccattccgttgttgctccagggaaatatcgatatcgtgggccaggcccagacaggg
acaggcaagaccgcagccttcggtctgcccatcattgagacagtacaggaaaagggcggc
cgagtgcaggctctcatcctcacccccacccgcgagttggccattcaggtggctgatgaa
atcaattcactcaaagggaacaaacgcatcaggatcatccccgtctacggcggccaggct
atccacatgcaattcaaggcgctcaaacgtggtgttgatgtgattgtcggtactccaggc
cgaatcatggaccacatgaaacgaggcacgctcaagctcgaccagcttgacttctttgtt
ctcgatgaagctgacgagatgtgcaacatgggctttgtggatgatgttcgcgaaatcctc
gcatctgcaaacacagataggcgcaccctgctcttctctgcgaccatgcccagagaggtc
atgcgtatcgcaaccgagttcatgcgtgactacgagactgtcaccgtcaaaacaacaaag
aatgactccccgctgattcgccatatctttcacgaaatggcagactccgatcgctttgaa
gccctttgccgtgtcattgatgctcagcccgaattctatggtctagtcttcactcgaacc
cgagctgatgcggataccgtcgcagaacggctcaacgaacgcggctatcctgctgaaccg
atccatggcgagatctctcagaatcgacgggaagatattctcaatcgattccgcagacgc
cgggccacaatcctggtcgctacagatgtggctgcgcgaggtattgatgtgccggacctc
actcatgtggtgaactttgccctgccgcaggacccgccgacctttgttcaccgtacaggc
cgtactggccgtgcaggcaaagaaggcatagccatcacactgatcacacccaatgaattc
cgtagactgatgtatatcaccaaaagctccggcatcgagatatccaaggaaaaattgccc
cgaattcaggatgtcatctattccaagaagagccggatggttaccaagctcgaatcaatc
atggctgaagacgatcatagtgcctaccagcccatggcgaaagaattgatgagcgaacag
gaccctgctgaaattattgccgcccttcttcgtcataccttcggggatgaattggtggaa
tccagctacaaagaaatcgacacgatcactcaggggaatcggggcagagcagatctgatc
tgtgctcttggtcgctctcatggcatgaaccccaaggagtttgtcgatttcatctccaaa
actgccaatatcaagcaatggtcaattcagcacgttcgggtacaagggaatcggaccacc
tttactgtacctggaaatgaagccaacaaggttattgacctcattaattcgagagatggt
cgccaattgattacccgtggggaaaacaattcaagaccaccctcccgtcgggattttaaa
aagacaggcggtccaagatacggtaaacggcccttcaaaaaaccgtacaaaccgaaaaaa
gattaa
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