Desulfotalea psychrophila: DP1413
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Entry
DP1413 CDS
T00192
Name
(GenBank) related to ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dps
Desulfotalea psychrophila
Pathway
dps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DP1413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dps03019
]
DP1413
Enzymes [BR:
dps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DP1413
Messenger RNA biogenesis [BR:
dps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DP1413
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
CAG36142
UniProt:
Q6AND2
LinkDB
All DBs
Position
complement(1578578..1579852)
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AA seq
424 aa
AA seq
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MSFAILGLCDELLQTVAEQGYTTPSQIQTEAIPVVLNQRDVMAVAHTGTGKTAGFTLPMV
QLLSGGDSPQPCTVRALVITPTRELAAQVAESVQTYGSMMNIRTGAAFGGVRIEPQIAKL
QAGLDVLVATPGRLLDLYNQQAVSFDALKILVLDEADRMLDLGFIDDIRHIQTLLPAKRQ
TLMFSATFSEEIKSLAGGMLHDPVLIEVDTDKNIVDSIKQKMHPVDQERKSALLIHLIKK
YNWQQLLVFSRTKRGADTLVTQLKEAGINAESIHANRTQYARTRALDGFKNGSVVVLVAT
DIASRGIDVHQLPCVINFDLPYVAEDYVHRIGRTGRAGTSGLAVSFFSEDEAQQLASIEK
LIGRKFERDIVQGFAPSKKPAVVLSDEDEEYGNFEPDPPRRKGKSKGQAGKPAKTKRKHW
KEYL
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgccattttaggcttgtgtgatgaacttttgcaaaccgtcgcagagcaagga
tacaccactccatcacagatacaaacggaagctattccagtggtgctgaatcagcgtgat
gttatggcggtggcacacactggcacgggaaaaacggctggctttaccttacctatggta
cagttattgtctggtggcgatagtccacagccatgcacagtacgtgcgcttgttattaca
ccaacccgtgagcttgcagctcaagttgccgaaagtgttcaaacctatggcagcatgatg
aatattcgcactggcgcagcatttggtggagtaagaattgagccacagatagccaaacta
caggctggtctagatgtgcttgttgcaacacctggccgtttgcttgatctttataatcaa
caggcagtgagctttgacgcacttaaaatattggtactcgatgaagcagatcgtatgttg
gatttaggctttatcgacgatatccgtcacatccaaacattacttccagccaagcgtcaa
actttgatgttctcagctacattttcagaagagatcaagtcacttgcagggggcatgcta
catgatcctgttttgattgaagtggataccgataaaaatattgtcgattccattaagcag
aaaatgcatcctgtagatcaggaacgaaagagtgcattattgattcacctaattaaaaag
tacaattggcagcaacttttggtctttagtcgtaccaagcgtggagccgacaccttagtt
actcagctcaaagaagctggcattaatgccgaatcaattcatgccaacagaacccaatat
gcacggacacgtgccttagatggttttaaaaacgggagtgttgtggtattggtcgcaaca
gatattgcctctcggggcattgatgttcatcaactaccgtgcgtgattaactttgatctc
ccctatgtagcagaagactatgtgcatcgcattggtcgtaccggccgtgctggtacctct
ggcttagcggtttcatttttcagtgaagatgaagctcagcaactcgcctctattgagaag
ctgattggccgtaaatttgaacgtgatatcgtccaaggttttgcgccgagcaagaagcca
gcagtagtgttatcagatgaagatgaggagtatggtaattttgaacctgatccacctcgg
cgtaaaggtaaatctaaggggcaggcaggaaaacccgcaaaaacaaaacgcaagcactgg
aaagaatatctttaa
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