Dichomitus squalens: DICSQDRAFT_77383
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Entry
DICSQDRAFT_77383 CDS
T03133
Name
(RefSeq) histone deacetylase RPD3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
dsq
Dichomitus squalens
Pathway
dsq03082
ATP-dependent chromatin remodeling
dsq03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
DICSQDRAFT_77383
03083 Polycomb repressive complex
DICSQDRAFT_77383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dsq03036
]
DICSQDRAFT_77383
Enzymes [BR:
dsq01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
DICSQDRAFT_77383
Chromosome and associated proteins [BR:
dsq03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
DICSQDRAFT_77383
HDAC complexes
Sin3A-HDAC complex
DICSQDRAFT_77383
BRAF-HDAC complex
DICSQDRAFT_77383
REST complex
DICSQDRAFT_77383
SHIP complex
DICSQDRAFT_77383
MiDAC complex
DICSQDRAFT_77383
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
DICSQDRAFT_77383
Heterochromatin formation proteins
Other heterochromatin formation proteins
DICSQDRAFT_77383
Chromatin remodeling factors
NuRD complex
DICSQDRAFT_77383
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
18844173
NCBI-ProteinID:
XP_007360956
JGI:
77383
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MSRRRVAYYYDPDVGAYSFGMTHPMKPQRMRITHELVSAYEMLPKMRVLRAKRASATDMT
KFHTDEYVHFLSRVTPENARQLTYNGNQFLVGDDNPAFDGVFEFCSISAGGSVAAAQRLM
EGKCDIAINWAGGLHHAKKREASGFCYVNDIVLGILEMLRSVPRVLYIDIDCHHGDGVEE
AFYTTNRVMTCSFHKYGEYFPGTGTQHDKGRGKGRGYALNIPLKDGITDEAYRSVFEPVI
DKILDVFQPSAIVLQCGADSLSGDKLGCLNLTMHGHANCVRYVRSKNIPLMLLGGGGYTV
KNVARTWTYETACALGIENDIDLNLPWNEYFEWFGPRYRLEVPESNMEDMNTESLDKVRS
NALEQLSRLRPAPSVGLQDVPRASVGEFLGIGSAHEQAPLDELDEQLAQHTRFVYNMQES
MARSESESDSESDTARPRTRSRDIRSGKKRMSLLTGEIYDVPRLEERENGYYDLGCGHEP
WANDAPARGVRRHFFQGGARWDPASHQIVMERERAGLSNGQVDVGRLMANGGREEEAATD
LVDEMDVDSEDVRV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcaggcgagtcgcgtattactatgatcccgatgtgggggcctacagctttggc
atgacgcaccccatgaagccccagcgaatgcgcatcacccatgagcttgtttcagcatac
gaaatgctgcccaaaatgcgcgtcctgagagcaaaacgcgcgtccgcaacggacatgacg
aaattccacaccgacgaatacgtgcatttcctatcaagagtcacccccgagaacgcgcgg
cagctcacatacaacggcaatcagtttctggtgggagacgacaatccggctttcgacggc
gttttcgagttctgttcgatatctgccggagggtccgtagctgctgcacaacggctcatg
gaggggaagtgcgacatcgccattaattgggccgggggcctgcaccacgcgaagaagcgc
gaggcgtccggtttctgctatgtcaacgacattgtcctcggcatccttgagatgctccgc
tctgtccctcgcgttctgtacattgacatcgactgtcaccacggagacggggttgaggaa
gcgttctacaccacgaaccgtgtcatgacgtgctccttccacaagtatggggagtacttc
ccggggacaggcacgcaacatgacaaggggcgggggaaggggagagggtacgcgctgaac
atccctctgaaggatgggatcacggatgaggcatacagaagcgtgttcgagccggtcatc
gacaagatcctcgacgtcttccagccctccgccattgtcctccaatgcggcgccgactcg
ctctccggggacaagctcggctgtctcaacctgacgatgcacgggcacgcgaactgcgtg
cgatacgtgcgctcgaagaacatcccgctcatgctcttgggcggtgggggatacacggtg
aagaacgtcgcgcggacgtggacgtacgagaccgcctgtgcgctcggcatcgagaacgac
atcgacctgaacttgccgtggaacgagtactttgagtggttcggcccgcgctaccgtcta
gaggtccctgagagcaatatggaggacatgaacaccgagtcgctcgataaggtccgctcg
aacgcattagaacaactgtcgcgactgcgtccagctccatcagtggggctgcaagatgtg
ccaagggcgagcgtgggggaattcctcggcatcggcagcgcgcacgagcaggcacctcta
gacgagctcgatgagcaactagcccaacacacccgcttcgtctacaacatgcaggagtcc
atggcccgatccgagtccgagtccgactcggaatcggacaccgcccgcccccgcacgcga
tcgcgcgacatacgcagtggcaagaaacgcatgagcctcctcacgggcgagatctatgat
gtgccccggttggaggagcgcgagaatgggtactatgatctcggctgcgggcacgagcca
tgggcgaacgatgcgcccgcgcgcggagtgcgcagacacttctttcaggggggagcgagg
tgggaccctgcgtcgcaccagatcgtcatggagcgggagcgggcggggttgagcaacggt
caggttgacgtcgggaggttgatggccaatggtggcagggaagaggaggctgctacggat
ctagtggacgagatggacgtcgactcagaggacgtccgggtatga
DBGET
integrated database retrieval system
