Dyella terrae: DYST_04687
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Entry
DYST_04687 CDS
T08348
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dta
Dyella terrae
Pathway
dta03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DYST_04687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dta03400
]
DYST_04687
Enzymes [BR:
dta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DYST_04687
DNA repair and recombination proteins [BR:
dta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DYST_04687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
AAA_22
AAA_25
AAA_12
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
ULU27721
LinkDB
All DBs
Position
complement(5125919..5129584)
Genome browser
AA seq
1221 aa
AA seq
DB search
MTATAPLQPLQLPLQGIQLIEASAGTGKTWTIAALYLRLVLGHGTHQGKALLPSQILVLT
FTKAATAELRERIRERLGEAADAFRGRREADEFLRSLIDVYPDDDCRARAARQLDLAAQW
MDESAIHTIHAWCQRMLSQHAFDSGHPFVQDTDTDESALLADVVRDYWRCHFFPLDRNGA
ALISRWWKTPADLQSDLQPLLRQPPESLRLDGRPLPDAERTLDEFRERVGASAIAEAQAR
QRWLDDVDAIEALFAQALAAGALNGNKMRKEKVIDELALLRAWASDGADASIALPRYTRT
ALAAAKNKSAEALQHPAFDAIETCVEAHGLVAPWRAPVLAHATRWVAAKLEETKQRRSQL
GFDDMLKRLDGALYGHTGKRLADTIATQYPMALIDEFQDTDPLQWRIFHRIYAHRDTNGL
LLIGDPKQAIYGFRGADIHTYLRARTSARQPMWTLGTNYRSTVPLVDAVNRVFAFADTHE
NGAFDFGRGKDALPFFPVAARGRSDELVLDGQPLPPMQLAVQPGDDAISGTAYTDLMAKH
AAAYLVDLLTAAQEGRCGFRREDSTLRPLQPGDIAILVRRGSEAAKVREEMQRRGLKSVY
LSDRDSVYASPEATDLLRWLRACAEPGSDRTMRAALATPTLGQSDAELDRLNLDEHHWEA
CGDRFRLLHATWQRHGVLAMLHDLLHAFDLPGRLLSHLDGERALTNLLHLAELLQHAAST
LDGEHALIRYLAAQIATASDPHSDTADEQIVRLESEAALIKVVTIHKSKGLEYPLVLLPF
VCSARELKADDSFTWHDDDGELRMDLRADDAALARADRERLQEDLRLLYVALTRAQYACW
LGVACTRAGQGKASTLHKSAFGHVLSGGSKIEPAELLPRLDALRGDGSDMTICLLDMPAT
QPVPASPSEIKPLWDARNYEGPTTERWRVSSYSGLKYAEVEHIHIPAPETAAQDTLIEAS
AEQPVLPNVIAAPAQGIHAFHAGAEAGTFLHDLLEWAADEGFAQTADDPSALEKEIARRC
QRRGWQSHIAMLTAWMAELLRTPLALPDGTRASLAQMDSHYAELEFWFEAMHVDTLALDR
LVTTHTLDARPRLPLLAERINGLLKGFIDLVVEQQGRYYVIDYKSNKLGNDATAYTTEAM
RDSILRERYDLQYALYTLALHRQLRARLPGYDYERHMGGVAYLYLRGVDEAGHGVHIEHL
PKALIEAMDRLFATGKHAHVA
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgaccgcaccgctccagcccctgcaactgccgctgcaaggcatccagctcatc
gaagccagcgcgggtacgggtaaaacctggaccattgccgcgctatatctacgactggtg
cttggtcacggcacgcatcaagggaaggcgttgctgccttcgcagatcctcgtgctcacc
ttcaccaaggcagccacggccgagttgcgcgaacgtatccgggagcgcctgggcgaagcg
gcggacgcgttccgcgggcgccgcgaggcggacgaattcctgcgcagcctgatcgacgtc
tatcccgatgacgactgccgcgcacgcgccgcgcgccaactcgacctggccgcgcaatgg
atggacgagtcggccatccacaccatccatgcctggtgccagcgtatgctgagccagcac
gcgttcgacagcgggcatccgttcgtgcaggacacggacaccgacgaaagcgcgctgctt
gccgatgttgtacgcgactattggcgctgccacttctttccgctggatcgcaacggcgcc
gcactgatctcgcgctggtggaaaacaccggccgacctgcagagcgacctgcagcccttg
ctgcggcaaccgccggagagcttgcgactggatggtcgccccctgcccgatgccgaacgg
acgctcgatgaattccgcgagcgtgtcggtgcttcggccatcgccgaggcacaagcccga
cagcgctggctggacgacgtcgacgccatcgaagccctgtttgcgcaggcgctggcagcc
ggtgcgctcaacggcaacaagatgcgcaaagagaaggtgatcgacgaactcgccctgctc
cgcgcctgggccagcgatggcgcggacgcatccatcgccttgcctcgctacacgcgcacc
gcgttggcagcggcaaagaacaagagcgccgaagcgctgcagcatcccgccttcgacgcc
atcgaaacctgcgtggaagcgcacggactggtcgcgccctggcgcgcacccgtactcgcg
catgccacccgctgggtcgcggcgaagcttgaggaaaccaagcaacgccgttcgcagctc
ggcttcgacgacatgctcaagcgcctcgacggcgccttgtacgggcataccggcaagcgc
cttgccgacaccatcgccacgcagtatccgatggcgctgatcgacgagttccaggacacc
gacccgctgcagtggcgcattttccatcgcatatacgcccaccgcgatacgaacggactg
ctactaatcggtgaccccaagcaggcgatctacggctttcgcggtgcggacatccatacc
tacctgcgtgcccgcaccagtgcgcggcaaccgatgtggacactgggcaccaactaccgc
tccactgtgccgttggtggatgccgtcaatcgtgtattcgcgtttgccgacacgcacgag
aacggtgcattcgacttcggccgtggcaaggatgcgctgcccttcttccccgtcgccgcg
cgtggccgtagcgacgagctggtactggacggccagccgctaccaccgatgcaactggca
gtgcagccgggcgacgacgcgatcagcggcaccgcttacaccgacctgatggcgaagcac
gccgccgcctatctagtcgatctgctcaccgccgcgcaggagggacgctgcggttttcgg
cgcgaggacagcacgctgcgcccgttgcagccgggcgacatcgccattcttgtacgccgt
ggctccgaagcggcgaaagtgcgcgaggaaatgcagcgtcgtggtctcaagagcgtgtat
ctctccgaccgcgactcggtctacgcctcgccggaagccaccgacctgctgcgctggctg
cgcgcctgcgccgagcctggctcggatcgcactatgcgcgctgcgctcgccacaccaacg
ctgggccagagcgatgccgagctcgatcgtctcaaccttgacgaacaccattgggaagcc
tgcggcgaccggttccgcctgttgcacgccacttggcaacgccacggcgtgctcgccatg
ctgcacgacctgctacacgcctttgacctgcccgggcgactgctgtcgcatctcgacggc
gagcgcgcactgaccaacctgctgcatttagccgaactgctacagcacgccgcgtccacg
ctggatggcgagcacgccttgatccgctacctcgccgcgcagatagccaccgccagcgac
ccgcactccgacaccgccgacgagcaaatcgtccgcctggaaagcgaagcggcgctgatc
aaggtggtgaccatccacaagtcaaagggcctggaatatccgctggtgctgttgcctttc
gtgtgttcggcgcgcgaactgaaagccgatgacagctttacctggcacgacgacgatggc
gagctgcgcatggacctgcgcgccgacgacgctgcgctcgcacgcgcagaccgtgaacgc
ctgcaggaagacctacgccttctctacgtggccctgacccgcgcgcagtacgcctgctgg
ctgggcgtggcctgcacgcgcgctggacagggcaaggcatcgacgctgcacaaatcggcg
ttcggtcatgtgttgtcaggcggctcgaagatcgagcccgccgagctcctgccgcgactg
gacgctttgcgtggcgacggcagcgacatgaccatctgtttgctggacatgccagccacc
cagcccgtgcctgcctcgccgtccgagatcaaaccattgtgggatgcgcgcaactacgag
ggcccgaccacggagcgctggcgcgtatcgagctacagcggcctgaagtacgccgaggtc
gagcacatacacatccccgcgccggaaacagcagcgcaggacacactgatcgaggctagc
gccgaacaacccgtgctgcccaacgtcattgcagcaccggcgcaaggcatccacgctttc
cacgccggtgcggaagccggcacgttcctgcacgacctgctggaatgggccgccgacgaa
ggctttgcgcagaccgctgacgacccgtcagcgctcgagaaggaaattgcacggcgctgc
cagcggcgcggctggcaatcgcacatcgccatgctcactgcatggatggcggagctgctg
cgcacgccactcgctctgccggatggcacacgtgcatcgctggcacagatggacagccac
tacgccgaactggagttctggtttgaggcgatgcacgtcgacacgctggcactcgatcgg
ctggtgacgacgcatacgctggatgcgcgccctcgcttgccgctgctcgctgagcgtatc
aacggcttgctcaagggtttcatcgatctggtggtggagcaacagggccgttactacgtg
atcgactacaaatccaacaagctgggcaacgacgccaccgcgtacacgacggaagcgatg
cgcgattcgatcctgcgcgagcgctatgacctgcagtacgcgctgtacacgctggcactg
caccggcagttgcgcgctcgcctgcccggctacgactacgagcggcatatgggaggcgtg
gcttacctgtacctgcgtggtgtggacgaggccgggcacggtgtacatatcgagcacctg
cccaaagcgctgatcgaagcgatggatcgcctgttcgccaccggaaagcacgcccatgtc
gcctga
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