Delftia tsuruhatensis: BI380_28145
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Entry
BI380_28145 CDS
T04496
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dts
Delftia tsuruhatensis
Pathway
dts03410
Base excision repair
dts03430
Mismatch repair
dts03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BI380_28145
03430 Mismatch repair
BI380_28145
03440 Homologous recombination
BI380_28145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dts03400
]
BI380_28145
DNA repair and recombination proteins [BR:
dts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BI380_28145
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BI380_28145
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BI380_28145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AOV04928
UniProt:
A0A1D8J891
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Position
complement(6160232..6161950)
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AA seq
572 aa
AA seq
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MKIIPREIPAQQAWALRQAGVHPLLAQLYAARGVCSADELDDTPARLLAPSGLLGMEAAV
RLLADAIERGLRLCIVADYDCDGATACAVGWRGLRMLGAAEVGYLVPDRVVDGYGLTPPI
ARRVKETGADVMVTVDNGIASVEGVAEAKSLGLQVVVTDHHLPGNHLPLADAIVNPNQPG
CSFESKSMAGVGVMFYVLLALRAELRARGRFDKASQPRLEALLPLVALGTVADVVKLDAN
NRRLVALGLKQIRRGQMQPGLQALFDAAGRKAFAATTFDFGFALGPRINAAGRLSDMTIG
IECLTTDDAGRAANLAQMLDAINRERRELEGGMREQALLMAEGLCTDGMTPPAAISVFDP
DFHEGVVGIVASRIKDRMHRPSFVFAASGAPGHEHELKGSGRSIPGFHLRDALDLVSKRH
PGLLLRFGGHAMAAGCTIAEAGFAVFEKALAQVAQEWLDAATLTRRIETDGPLDPDFRKP
EMVEQLNLAVWGQGFAPPTFSEQLEVLSQRLVGEKHLKLQLRHQGETVDGIWFGHTDPLP
SSACIAFRMDINEWRGERKVQFLIEGVHSDIS
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcatcccccgcgagatccctgcgcagcaggcctgggcactgcgccaggccggt
gtccacccgctgctggcccagctctacgccgcacgcggcgtgtgttccgccgacgaactg
gacgacacacccgcgcgcctgctggccccctcgggcctgctgggcatggaggccgccgtg
cggctgctggccgatgccatagagcgcggcctgcgcctgtgcatcgtggccgactacgac
tgcgacggcgccaccgcctgcgccgtgggctggcgcggcctgcgcatgctgggcgcggcc
gaggtcggctacctggtgcccgaccgcgtggtggacggctacggcctgacaccccccatc
gcgcgccgtgtcaaggaaaccggcgccgacgtgatggtcaccgtggacaacggcattgcc
agcgtcgaaggcgtggccgaggccaagtccctgggcctgcaggtggtcgtcaccgaccac
cacctgcccggcaaccacctgccgctggccgatgccatcgtcaaccccaaccagcccggc
tgcagcttcgagagcaagtccatggccggtgtcggcgtgatgttctacgtgctgctggcc
ctgcgagccgaactgcgcgcgcgcggccgcttcgacaaggccagccagccccgtctggag
gccttgctgcccctggtcgccctgggcaccgtggccgacgtggtgaagctggacgccaac
aaccgccgcctggtcgccctgggcctcaagcagatacgccggggccagatgcagccgggc
ctgcaggccttgttcgacgcggccggccgcaaggcctttgcggccaccacgttcgacttc
ggctttgccctgggcccgcgcatcaatgcagcaggccggctgtccgacatgaccatcggc
atcgagtgcctgaccacagacgacgcaggccgcgcagccaacctggcccagatgctggac
gccatcaaccgcgagcgccgcgagctggaaggcggcatgcgcgagcaggccctgctcatg
gccgagggcctgtgcacggacggcatgacgccgccggcggccatcagcgtgttcgacccc
gatttccacgaaggcgtggtcggcatcgtggcctcgcgcatcaaggaccgtatgcaccgg
cccagcttcgtcttcgcagccagcggcgcgccggggcacgagcatgaactcaagggctcg
ggccgctccattcccggctttcacctgcgcgacgcgctggacctggtatccaagcgccac
cctggcctgctgctgcgcttcggcggccacgccatggcggccggctgcaccattgccgaa
gccggattcgccgtgttcgagaaggccctggcccaggtggcccaggaatggctggacgcg
gccacgctgacgcggcgcatagaaaccgacgggcctctggaccctgatttccgcaagccg
gaaatggtcgagcagctcaatctcgcggtctggggccagggctttgcgccccccaccttc
agtgaacagctggaagtgctgtcacagcgcctggtcggggaaaagcacctgaaactgcaa
ttgcgccatcagggcgaaaccgtggacggcatctggttcggccataccgacccgctgccg
tcatcggcctgcattgcatttcgcatggacatcaatgaatggcgcggagagcgcaaggtg
caattcctgatcgagggcgttcattcggacatttcctag
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