Dehalococcoides sp. UCH007: UCH007_05270
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Entry
UCH007_05270 CDS
T03880
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
duc
Dehalococcoides sp. UCH007
Pathway
duc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UCH007_05270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
duc03021
]
UCH007_05270 (rpoB)
03400 DNA repair and recombination proteins [BR:
duc03400
]
UCH007_05270 (rpoB)
Enzymes [BR:
duc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UCH007_05270 (rpoB)
Transcription machinery [BR:
duc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UCH007_05270 (rpoB)
DNA repair and recombination proteins [BR:
duc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UCH007_05270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAQ34485
UniProt:
A0A0C6EI49
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All DBs
Position
497613..501431
Genome browser
AA seq
1272 aa
AA seq
DB search
MVSMLPKADAATGVIRKSYAQLPEVVNVPNLIEMQLQSFVWFQEEGLRELIEEISPIKDF
VGNRLELEFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIVKTTGEIKEPFDLFFGDI
PLMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHTNLIPSRGAWLEFETS
NRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLIKD
EISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELPAREVGE
NRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLERVAR
ERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMDQTNPLAEITNKRRLSAMGPG
GLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRYGFVETPYRKVYS
KLKNSDKKLVGLKLKTEVSEKGKVLAAAGTIITEDSFKLISKLPECDIQVMPFVSAEVKY
MPADEEDRYIIAQANTRLDDKGYFLDERIEARLAERYVIEPPEKIDYMDVSPKQIFSVAA
SLIPFLEHDDANRALMGANMQRQAVPLLRAEAPMVATGMEREAARYSGQVIFAKRAGVAT
SVTSEKIIIRTADGGHDEYLLKKFVRTNQGTCINQHAVINKGQKIEAGQVLADSSATENG
ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEARDTKLGVEEITR
DIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLRAIFGEKARE
VKDTSLRMPHGEWGKVINVRVFSRDSGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGN
KGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHLLGFRVATPV
FDGADDTAIEDALARSWLSTKAGAIDMSPENKRPSADNAKAIEWIKQQGFDGKKIFDEKH
PGLAKEVSLKLWLKDMGVDASALSGAELEKKAYEVSSQNRLPSPIVGKSVLRDGRTGETF
DQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGGQRFGEMEVWAMYAY
GTAHNLQEMLTIKSDDIAGRAKAYESIVKGEDVLQPGVPESFKVLVKELQSLGLAVEVIN
EEVKIAPSEKVASLNEGNQPGSDDISAEILPETLYAGTEDIEDSMMSVIDADDQDLAMSS
NDEEVSENDERS
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggtatctatgttacctaaggccgacgccgccactggtgtaatccgcaaatcttatgcc
caattacccgaggttgtcaatgtacctaacctgatagagatgcaactgcagtcttttgtc
tggtttcaggaggagggtctccgtgaactgattgaggagatttctccaatcaaagacttt
gtgggaaacaggctggaactggaattcatcggctatgaattcagagagccccgtttatcc
gagtacgaatgcacccagcgtgaccagacctactctgtgcccctatatgtaaaagccagg
ctgatagtaaaaactaccggtgaaatcaaagaaccctttgatttgttcttcggggatatc
ccacttatgaccgctttgggtacatttattaccagcggtacggagcgggtagttgtcagc
cagctattgcgttcaccgggtgtttactttaccatttcagatgacccggccaccggccgc
cctctctgccatactaaccttattcccagcaggggtgcctggctggagtttgaaacctcc
aaccgggatgttatttcagtaaaaattgacgggcgtcgcaagattcccgtcagtaccctt
ctgagggccataggttattctgacgatttggatattttaaacctgtttgaggttattgat
aatgaccccgaacgccattatatccagtccagcattgaccgtgatccgcttataaaggat
gaaataagtgcccttattgatatttacagccgtttgcgccccggtgatccgcccaatgcg
gacaacgcccgcaaacttattaacgaaatgttctttgacccccagcactatgatctgggt
aaggtaggccgttacaaggttaaccgccgtctggaattgccggcccgtgaggttggtgaa
aaccgtgcccttacccgtgaggacatagtagccattatccagcggattatcatggtcaat
aacggacaggatactccggatgatattgaccatttgggcaaccgcagaatccgcactgtg
ggtgaacttgttcagaaccagttccgcataggtctggtacgtttggagagagttgcccgt
gagagaatgagcattgtcaatctggaaatggttactcccagtgctttggttaatatccgt
ccggtggtttcagctgttaaagagttttttggtggttcacagctttcccagtttatggac
cagactaaccctctggctgaaataaccaacaaacgccgtctgtccgccatgggtcccggc
ggtctttctcgcgaaagagccggctttgacgttcgtgacgttcattactctcattacggg
cgtatctgccccattgagacgcctgaaggcccgaatattggtcttatcggttctctggct
acttatagccggattaaccgctatggctttgtggaaactccctaccgcaaggtttattcc
aaactgaaaaatagtgataaaaaactggttggtcttaaactgaagaccgaagtcagtgaa
aaaggcaaggttcttgcggctgccggtactatcattaccgaagacagctttaagctcatt
tcaaagctgcctgagtgtgatattcaggttatgccgtttgtatctgccgaagtcaaatat
atgcctgcagatgaagaagaccgctatattatcgcccaggctaatacccgtttggacgat
aaaggttatttccttgatgaaaggattgaagcccgtctggctgaacgctatgtaatagag
ccccccgaaaagattgattacatggatgtttcacccaaacagattttcagcgtagcggct
tcgcttattccgttccttgagcatgacgatgccaaccgcgcccttatgggtgccaacatg
caacgccaggctgtgcctctgcttcgggcagaagctcccatggtagcaaccggtatggaa
cgcgaagcagccagatactccggtcaggttatttttgccaagcgcgccggtgtagctact
tcggttaccagcgagaaaataataatccgcaccgctgacggcggacatgatgaatatctg
ctcaagaaatttgtccgcaccaatcagggtacatgtataaatcagcatgccgttataaat
aaaggacagaagatagaggccgggcaggtactggctgatagctctgctaccgaaaacggc
gaactggctctgggtcaaaattgtgttgtggcctttatgagctggcagggttttaactat
gaagatgctattatcctcagcgaacgtctggtaagggaagacgcctttacctctattcat
attaccaagcatgagcttgaggcccgtgataccaaactgggtgttgaagaaatcacccgt
gatattcccaacgtaggtgaagaaagcctgcgcgaactggatgaagacggtattatccgc
ataggggctgaagttggcccggatgatattctggtgggtaagatcacccccaagggtgaa
accgagctttcagcagaagaaaaactccttcgggccattttcggcgagaaagcccgcgaa
gttaaggacacttcactccgtatgcctcatggtgaatggggtaaggttataaatgtaagg
gtcttctcccgtgacagcggtgatgacttgcctgccagagtgaacaaatgggtgcaggtt
tgggttgcccagaaacgcaaggtttcagtgggtgacaaactggctggccgccatggcaac
aagggtgttatctctataattgccccagtagaggatatgccttatctgcctgatggcacc
ccggtagatgtggttttgaatcccatcggcgtaccttcacgcatgaatctgggacagatt
ttggaaacccatctgggttgggcaggacatctgctgggcttcagagtggctacccccgta
tttgacggggcggatgataccgctattgaagacgctttagcccgctcctggctttcaacc
aaggctggtgcaatagacatgagccctgaaaacaaacgccccagcgcagataatgccaag
gctatagagtggataaaacagcagggctttgacggcaagaagatatttgatgaaaaacac
cctggtctggccaaggaggtcagccttaagctttggcttaaggatatgggagtagatgcc
tctgctttaagtggggctgaactggaaaagaaagcttacgaagtgagcagccaaaaccgc
ctgccttcgcctattgtgggtaaatcagtactgcgtgatggccgcaccggcgaaaccttc
gaccagccggtaaccgtaggcaatatgtacatccttaaacttatccacttagtggaagac
aaggtacatgcccgtgcaaccggtccgtattcacttatcagccagcagcctcttggcggt
aaagcccagttcggcggccagcgctttggtgaaatggaagtttgggccatgtacgcgtat
ggtacagctcataaccttcaggagatgctgactatcaagtcagacgatattgccgggcga
gccaaggcttatgaatctattgtaaagggggaggatgtactccagcccggtgtacccgaa
tccttcaaggtgcttgtaaaggaactgcagagtctgggtttggcagttgaagtgataaat
gaagaagttaaaattgctccatccgagaaagtagcctctctgaatgaaggaaaccagccg
gggagtgatgatatttctgctgaaatacttcctgaaaccctgtatgcaggcacagaggat
atagaagactccatgatgtcggtaattgatgctgacgatcaagatttggcaatgtcatca
aatgatgaagaggtatccgaaaacgatgaacgaagttaa
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integrated database retrieval system
