Dickeya zeae: W909_11310
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Entry
W909_11310 CDS
T03567
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent helicase HrpA [EC:
5.6.2.6
]
Organism
dzc
Dickeya zeae
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
W909_11310
Enzymes [BR:
dzc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
W909_11310
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
T2SSE
AAA_19
NACHT
nSTAND3
PhoH
FtsK_SpoIIIE
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AJC66631
LinkDB
All DBs
Position
complement(2499407..2503294)
Genome browser
AA seq
1295 aa
AA seq
DB search
MTSPLHALEPQLDALMLRDRQRLRRRLQGAMKVGNPQAQAAIAQEIGQEIDTARLRVEQR
RTSLPTIHYPEALPVSQKREAILSAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVTGL
IGHTQPRRLAARSVADRIAAELETPLGSTVGYKVRFNDQVSDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRHFSNA
PVIEVSGRTYPVDVRYRPVVEEAQDSDRDQLQAILDAVDELCHEGPGDILVFMSGEREIR
DTADALSKLDLPHTEILPLYARLSSQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAAGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIHTSDDGRYR
LTPQGRQLAQLPVDPRLARMVLEARQTSCVREAMIITAALSIQDPRERPVEKKQAAEEKH
RRFADKESDFLAFVNLWDYLQEQQKALSSSQFRKLCRSDYLNYLRVREWQDIYTQLRQVV
KELGFPVNSEPADYRSLHCALLTGLLSHIGQKDVDKQEFSGARNTRFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWVEPLAQHLIKRSYSDPHWEKAQGAVMAQEKVTLY
GLPLVAARKVNYGAIDPVVSRELFIRHALVEGDWQTSHGFFRANQQLRQEVEELENKSRR
RDILVDDETLFAFYDQRVPQDVVSSRHFDSWWKQAAKANPELLNFEKAMLIKDGAERVSA
LDYPNHWQQGELRLRLTYQFEPGADADGVTVHIPLPVLNQVKEDGFEWQIPGLRRDLVVA
LIKSLPKPIRRNFVPAPNYAQAFLARVTPLEKGLLEALERELRLMTGVTVDREAWQWDQV
PDHLKITFRVVDEKNRTLREGKQLRALKDQLQEKVQQTLSAVADDGIEQRDLHIWSFGDL
PERYEQKRGGYAVKAYPALVDEKDSVAIRLFDSPHQQQQMMWRGQRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLMEQAGGPVWQEAAFRQLHERVRAEL
NDTVVDIARQVEQILTTVFNINKRLKGRVDMALALALSDIKSQLGGLVFRGFVTDNGYKR
LPDVLRYLQAIERRLDKLAQDVHRDRAQMLKVEQVQQAWQQWLNKLPPERRDDDDVKAIR
WMLEELRVSYFAQQLGTPYPISDKRIMQAMDQIDG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcacctctccatgcgttagaacctcaacttgatgccttaatgctacgtgaccgg
caacgtttgcgtcgccgtttgcaaggcgcgatgaaagtggggaatccacaggcgcaggcg
gcgattgcgcaggaaattggtcaggagattgatactgctcgcctgcgggtagaacaacgc
aggacgtcgctgccgactatccattatcccgaggcgttgccggtcagccagaaacgtgag
gcgatcctcagcgctatccgcgatcaccaggtggtgatcgtggccggggaaaccggttca
ggtaaaaccacccagttgccgaagatgtgcctggagttggggcgcggcgtgaccggtctg
ataggccatacccagccgcgtcgactggcggcccgcagcgtggcggaccgcattgccgcc
gagctggaaaccccgttgggcagcaccgtgggttacaaggtgcggtttaacgatcaagtg
agtgacaacacgctggtcaagttgatgaccgacggtatcctgctggcggagattcagcag
gacaggctgctgatgcagtacgacacgctgatcattgatgaggcccacgaacgcagcctc
aatatcgattttattctcggttacctcaggcagctgttaccgaaacgcccggacctcaag
gtgataatcacctcggcgaccatcgacccgcagcgtttttcgcgccatttcagtaatgcg
ccagtgattgaagtgtccggacgtacctacccggtggacgtgcgttatcgaccggtggtg
gaagaagcgcaagacagcgaccgtgatcagctccaggcgatactggatgcggtggatgag
ctgtgccacgaagggccgggcgatattttggtgtttatgagcggcgagcgggaaatccgc
gatacggccgatgcgttaagcaagctcgacttgccgcataccgagattttgccgctgtat
gcgcgtctttccagtcaggagcagaaccgggtattccagtctcaccacgggcgtcgcatc
gtgctggcgaccaacgtggcagaaacgtcgctgaccgtacccggcattcgctatgtgatt
gaccccggcacggcgcgcatcagccgctacagctatcgtaccaaggtgcaacgcttgccg
attgagccggtgtcacaggcttccgccaaccagcgaaaagggcgctgtggccgtgtggcg
gcggggatctgtatccgcctttattctgagcaggattttctctcccggcccgagtttacc
gacccggaaattttgcgtaccaacctggcctcggtcattttgcagatgacagcgttgggg
ctgggggatatcgcggccttcccgtttgtcgaagcgccggacaaacgcaatattcaggac
ggggtacggttactggaagagctgggcgcgattcacaccagcgatgatggccgttatcgc
ctgacaccgcaggggcggcaactggcgcaactgccggttgacccgcgtctggcacgtatg
gtgctggaagcgcgacagaccagctgtgtccgtgaggcgatgatcattaccgccgcgttg
tcgattcaggacccacgcgaacgcccggtagagaaaaagcaggcggcggaagaaaaacat
cgccggtttgccgacaaagagtctgattttctggcgttcgtcaacctgtgggattacctg
caggaacagcaaaaagccttgtcatccagccagtttcgtaagctgtgccgtagcgactac
ctcaactacctgcgggtgcgggaatggcaggatatctatacccaactgcgtcaggtggta
aaagaactgggcttcccggtgaatagcgaaccggcggattaccgcagcctgcattgcgcg
ttgctgaccggcctgttgtcccatatcgggcaaaaagacgtcgataagcaggaattcagc
ggtgcgcggaacacccgctttgccattttccccggctccggtttgtttaagaagccgccg
aagtggacgatggtggcggaactggtggaaaccagccgtttgtgggggcgtatcgctgcc
cgcatcgaaccggaatgggtcgagccgctggcgcagcacctgatcaaacgcagttacagc
gatccgcactgggaaaaagcgcagggcgcggtgatggcgcaggagaaagtcacgctgtac
ggtttgccgctggtggctgcccgtaaagtgaactatggcgctatcgacccggtggtgtcg
cgtgaactgttcattcgccatgcgttggtggaaggcgactggcaaacctcccacggtttt
ttccgggccaaccagcaattacgccaggaagtggaagaactggaaaacaaatcccgccgc
cgcgatattttggtggatgacgagacactgtttgcgttctacgaccagcgtgtgccgcag
gatgtggtatcaagccgccatttcgacagttggtggaaacaggccgccaaagccaacccg
gaattgctcaatttcgaaaaggcgatgctgatcaaagatggcgcggaacgtgtcagcgcg
ctggattacccgaaccattggcagcagggtgagctgcggttacggctgacctaccagttt
gaaccgggcgctgatgcggacggcgtgaccgtgcatatcccgctgccggtattgaatcag
gtgaaagaagacggattcgaatggcagatccctgggttacggcgtgatctggtggtggcg
ttgatcaagtcattgccaaaaccgatacggcgtaactttgtaccggcacctaactacgcg
caagcgtttctggcgcgggtcaccccactggaaaaagggttgctggaagcgttggagcgt
gagttacgcctgatgactggcgtgacggttgaccgcgaggcctggcagtgggatcaggtg
cccgatcatctgaaaatcaccttccgggtggtggatgagaaaaaccggacgctgcgggaa
ggcaagcagttgcgggcgctgaaagatcagttgcaggagaaggtgcaacagacgttgtcg
gcagtggcggatgacggcatcgagcaacgcgatttgcacatctggagttttggcgattta
ccggagcgctacgaacaaaaacggggcggttatgcggtaaaagcctatccggcgctggtg
gatgaaaaagacagcgtggcaatccgtctgtttgattcgccgcaccagcaacagcagatg
atgtggcgtggtcagcgccgtctgttgctgctcaatattccgtcacccattaagtatctg
cacgagaaactgccgaataaggccaagctggggctgtatttcaacccttacggcaaggtg
ctggagctgattgacgattgcatcgcctgtggtgtggacaaattgatggaacaagccggt
ggcccggtgtggcaggaggcggcgtttcgccagctgcacgagcgtgtgcgggcggagctg
aatgacacggtggtggatattgcccgtcaggtggagcagatcctcaccacggtgtttaac
atcaataaacggttgaaaggccgggtggacatggcgctggcactggcgttaagcgacatc
aaaagtcagttgggcgggttggtatttcgcggtttcgtgaccgataacggctataagcgc
ttgccagatgtgctgcgttatctgcaagccattgagcgtcggctggataaactggcgcag
gatgtccaccgcgatcgggcgcagatgctgaaagttgagcaggtgcagcaggcctggcag
cagtggctgaataagctgccgccggaacgacgcgatgatgatgacgtgaaagccatccgc
tggatgctcgaagagttgcgtgtcagctattttgcccagcaactgggcacaccgtatccc
atttctgataaacgcattatgcaggcgatggatcagatagacgggtaa
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