Escherichia albertii: EAKF1_ch3196
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Entry
EAKF1_ch3196 CDS
T03986
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
eal
Escherichia albertii
Pathway
eal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EAKF1_ch3196 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eal03400
]
EAKF1_ch3196 (recB)
Enzymes [BR:
eal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EAKF1_ch3196 (recB)
DNA repair and recombination proteins [BR:
eal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EAKF1_ch3196 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AHE61047
LinkDB
All DBs
Position
3358237..3361779
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AA seq
1180 aa
AA seq
DB search
MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAVLYLRLLLGLGGSAAFPRPLTVEDLL
VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYARLLEEIDDKAQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV
GELDALIESSGIDRRKFNRSNQAKWIDKICAWAEEETNSYQLPEPLEKFSQRFLEDRTKA
GGETPRHPLFEAVDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS
ALRSESGEALASAIRARFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY
AFRGADIFTYMKARSEVHAHYTLDINWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS
AGKNQALHFVFKGETQPSMKMWLMEGENCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL
MNGDAARPVSASDISVLVRSRQEAALVRDALTLLDIPSVYLSNRDSVFETLEAQEMLWLL
QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDAVVEEFDGYRQIWRKRGVMPM
LRTLMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS
NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDL
NEAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDRKGPTDVHQSALGR
LLQKGEPLDAAGLRACIEALCDEDIAWQTAQIGDNQPWRVNTVSTAELNVKTLQRLPGDN
WRVTSYSGLQQRGHGIAQELMPRLDVDAAGIASVVEEPTLTPHQFPRGASPGTFLHSLFE
DLDFTQPVEPNWVREKLELGGFEPQWEPVLTEWITAILQAPLNESGVSLSQLSARDKQVE
MEFYLPISEPLIASRLDALIRQFDPLSAGCPPLEFMQVCGMLKGFIDLVFRHEGRYYLLD
YKSNWLGEDSSAYTRQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDKEHPQQGIYTTRPDAGLIALMDEMFAGMTLEEA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgtcgccgagacactagatcctttgcgcttgcccttacagggcgagcgcctg
attgaagcctctgccggcacaggcaaaacctttacgattgcggtgctctatttgcgcctg
ttacttggactaggcggttctgccgcctttccccgcccgctgaccgttgaagatctgctg
gtggtgacctttaccgaggctgccaccgcagaattgcgcggtcgtatccgtagcaatatc
cacgagttgcgcatcgcctgtctgcgagaaacgaccgacaacccgctgtacgcgcgcctt
ctggaagagattgacgacaaagcgcaggccgcacaatggctgctgttagccgaacggcag
atggatgaagcggcggtctttaccattcacggtttttgccagcgtatgctcaatctgaat
gcctttgagtccggcatgttgtttgagcagcaactgatagaagatgaatcgctgttacgt
taccaggcctgcgcggatttctggcgtcgtcactgctatccgttgccgcgtgaaattgcc
caggtggtctttgaaacctggaaagggccacaggccttgctgcgagacattaaccgttat
ctgcaaggggaagcgccggttatcaaagcgccgccgccggacgatgaaacgctggcttct
cgtcacgcgcaaattgtggcgcgtatcgatactgtaaaacagcagtggcgtgatgcagta
ggtgaactggatgcgctgattgaatcttccggtattgatcgccgcaagtttaaccgtagc
aatcaggctaaatggatagacaagatctgcgcctgggcagaagaagagacaaacagttat
cagttgccagagccactggaaaaattctcccagcgtttcttagaagatcgcacgaaagcg
gggggcgagacgccgcgtcatccgttgtttgaggcggtcgatcaattgcttgccgagccg
ctatcgatccgtgatttggtgatcactcgtgcgctggcggagatccgcgaaacagtagcg
cgtgaaaaacgtcggcgtggtgaactgggttttgacgacatgttaagtcggctggattcc
gcgttgcgtagtgaaagcggtgaggcgctggccagcgcgatccgtgctcgtttcccggtg
gcgatgatcgacgaatttcaggacaccgaccctcaacagtaccggatttttcgccgtatc
tggcaccatcagccggaaactgcgttgttgttgattggtgatccgaaacaggctatttac
gcgttccgtggtgcggatattttcacctacatgaaggcgcgtagtgaagttcacgcgcac
tataccttagatattaactggcgttccgctccggggatggtgaatagcgttaacaagctt
ttcagccagactgatgacgcttttatgtttcgcgaaataccgtttattcccgtgaaatct
gccgggaaaaatcaggcgctacattttgtttttaaaggcgaaacgcaaccatcaatgaaa
atgtggttgatggaaggtgaaaactgcggtgttggcgattatcaaagcaccatggcgcag
gtatgtgccgcgcaaatccgcgactggttacaggccgggcagcgcggagaagcgttgctg
atgaacggtgacgccgcgcgtccggtaagcgcttcggacatcagtgtgttggtgcgcagc
cgtcaggaggccgccctggtgcgcgatgccttaacgctgctggacatcccttccgtttac
ctttctaaccgcgatagtgtgtttgaaactctggaagcgcaggagatgctttggctgttg
caggcggtgatgacgcctgaacgagagaacactctgcgcagtgcgctggcaacgtcaatg
atggggctaaacgcactggatatcgaaacgctaaataatgacgaacatgcgtgggatgcg
gtcgtcgaagagttcgatggttatcggcaaatctggcgaaaacgcggcgttatgcccatg
ctgcggacgctgatgtcggcgcgcaacattgcagaaaatctgttggcaacggcaggcggc
gagcggcgtcttaccgatatcttgcatattagcgagctgctccaggaagcgggaacacag
cttgaaagtgaacatgcgctggtacgctggttatcgcagcatatcctcgagcccgacagt
aacgcctccagccagcaaatgcgcctcgaaagtgacaaacatctggtgcagattgtcacg
attcataaatcaaaaggactggaatatcctctggtctggctgccatttatcaccaatttc
cgcgttcaggatcaggcgttctatcacgatcgccactcatttgaggctgttctggatctt
aacgaagcgccagaaagcgtcgatctggctgaagccgagcgtctggcggaagatttgcgt
ttgctttacgtggcgctgacgcgttcggtttggcattgcagcctcggcgttgcgccgctg
gtgcgtcgtcgtggcgatagaaaagggccaactgatgttcaccaaagcgcgctcgggcgc
ttgctgcaaaaaggggaaccattagatgcggcaggccttcgcgcctgtattgaagcgtta
tgcgatgaggatattgcctggcagacggcacaaatcggtgataaccaaccctggcgagtt
aatactgtttctaccgcagagttgaatgtgaagacgctgcaacgactccccggtgataac
tggcgtgttaccagctattccggtttacagcagcgcggtcacggtattgctcaggaactg
atgccgcggctggatgtcgatgctgcaggcattgccagcgtcgttgaagaaccgacgtta
acaccgcatcagttcccgcgtggtgcgtcaccgggaacatttttgcacagcttgtttgag
gatttggattttacccagccagttgagccgaattgggtgcgggaaaaactggaactcggc
ggctttgaaccgcagtgggaaccggtgttgaccgagtggattaccgctattcttcaggca
ccgctcaatgaaagcggtgttagcttaagtcagctttccgcccgtgataaacaggtggag
atggagttttatctgccgattagtgaaccgcttatcgccagccggcttgatgcgttaatt
cgccagtttgacccgctttctgcaggctgcccgccgctggagttcatgcaggtgtgcggc
atgttgaaaggttttatcgacctggtgttccgtcatgaagggcgttattacctgctcgac
tataaatccaactggttgggtgaagacagttccgcatatacccgacaggctatggcagcg
gcgatgcaggcacaccgctatgatttgcaatatcagctttataccctggcgctgcaccgt
tatctacgccatcgcattgctgattacgactatgagcgccattttggcggcgttatctat
ctgttcctgcgcggtgttgataaagaacatccgcaacaaggaatttacacgacccgaccc
gatgctgggttgattgccctgatggatgagatgtttgccggtatgaccctggaggaggcg
tga
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