Exiguobacterium aurantiacum: NMQ00_04935
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Entry
NMQ00_04935 CDS
T08404
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eaur
Exiguobacterium aurantiacum
Pathway
eaur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eaur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMQ00_04935 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaur03019
]
NMQ00_04935 (rnr)
03016 Transfer RNA biogenesis [BR:
eaur03016
]
NMQ00_04935 (rnr)
Enzymes [BR:
eaur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NMQ00_04935 (rnr)
Messenger RNA biogenesis [BR:
eaur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NMQ00_04935 (rnr)
Transfer RNA biogenesis [BR:
eaur03016
]
Prokaryotic type
tRNA degradation factors
NMQ00_04935 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
UTT43850
LinkDB
All DBs
Position
940997..943399
Genome browser
AA seq
800 aa
AA seq
DB search
MNLRDQLLEIIQTSDKALTVDQLTERLALESTDAFKELIRTLNTLEEEGLIGRTRTNRYG
TLAVLGQAAGIISIHQRGFGFLSVEGETEDVFLPPDQLKDVYHGDTILVKKREDNRGKTE
GVLLKVLKRGLSEFVGTYTLPSGRLDQFAFIEPDDKRINFWPVVNPDKSLGAVDGHKVVV
RITKYPDGRFAGACDVVRIIGHKNDPGVDILSIVYKHGIPTEFPEDVIDQANAVPDEADE
NDFMGRVDLRNETIFTIDGEDAKDLDDAVHVKKLDNGNYELGVHIADVSHYVTEGSPLDV
EAFERGTSVYLVDRVIPMLPHRLSNGICSLNPHVNRLTLSCVMEISPQNGKVVNHELFPS
VIKTTERMTYTNVREIIERDDEATLERYEPYIPLFDLMAELAEVLRTRRNSRGAINFDFA
EAKVVVDEEGKPADIVLRPRSVAEKLIEEFMLAANETVAEHFHKMDVPFIYRVHDNPKPD
KLDFFFDFVANFGVHIERFKGQKVEPKTLQKILKAISGEPEEPVISTIMLRSMQQAKYDD
VSLGHFGLATDFYTHFTSPIRRYPDLIVHRLMRTYAFNGDLSEKTIAKYEDRLDSIAEQA
SKRERRSVDAERETQSLKKAEYMESRLGEEFDGVVSGVTNFGMFIELPNTIEGLVRLQSM
DDYYHFDESQLMLLGERTKRQFRIGDSVRVKVDAVNLDERTIDFTVVGMPKREQSRRRQP
TTIKATEGRPKKDDKKGRGRDDKRPKRGKPGKPGKPGQAGKPSKPGEKPKTSQGRSALDL
KKKDGQKRTGDAKRGAKKRR
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttacgtgaccaactactagaaatcattcagacaagcgacaaagctttaactgtc
gaccaattgaccgagcgtctcgcgctcgagtcgacggatgcctttaaagagctcatccgc
accttgaacaccctcgaagaagagggtttgatcggccgcacccggacgaaccgttacggg
acgctcgccgtgctcggccaagcagcggggatcatctcgatccaccaacgcggctttggc
tttttatcggtcgaaggcgagacggaggacgtgttccttccgcccgaccaattgaaagac
gtctaccacggggatacgatactcgtcaaaaaacgtgaggacaaccgcggcaagaccgag
ggcgtgctcctcaaagtattgaagcgcggcttgtcggaattcgtcgggacgtatacgctc
ccgagcggacgcctcgaccagttcgccttcatcgagccggacgacaagcgcatcaacttc
tggccggtcgtcaacccggataaatcgctcggtgccgtcgatggccataaagtcgtcgtc
cgcatcacgaaatatccggacggacgtttcgccggagcgtgtgacgtcgtccgcatcatc
ggacacaagaacgacccaggcgtcgacatcttgtcgatcgtctataagcacggcattccg
acggagttcccggaagatgtcatcgaccaggcgaacgccgtgccggacgaggccgatgag
aatgacttcatgggccgcgtcgatcttcgcaacgagacgatttttacgatcgacggcgaa
gacgcgaaagacttggacgatgccgtccacgtcaagaaactcgacaacggtaactatgag
ctcggcgtccatatcgccgacgtgtcacattacgtgacggaagggtcaccgctcgacgtc
gaggcgttcgaacgggggacgagtgtgtatctcgtcgatcgcgtcatcccgatgttgccg
caccgtctctcgaacgggatctgttcgctcaacccgcacgtcaaccggttgacgctcagc
tgcgtcatggagatctccccacaaaacgggaaggtcgtcaaccatgagctgttcccgagt
gtcatcaagacgacggagcggatgacgtatacgaacgtccgtgaaatcatcgaacgcgat
gacgaagcgacgctcgaacgttacgagccgtacatcccgttgttcgacctgatggccgag
ctcgcggaagtgctccgtacgcgccgtaactcgcgtggtgccatcaacttcgatttcgcc
gaggccaaagtcgtcgtcgacgaagaaggcaaaccggccgacatcgtcttacgtccacgc
tcggtcgccgagaagttgatcgaagagttcatgctcgcggccaacgagacggtcgccgaa
cacttccacaagatggacgtgccgttcatctatcgtgtccacgataacccgaaaccagac
aagctcgatttcttcttcgacttcgtcgcgaacttcggtgtgcatatcgagcggttcaaa
ggccaaaaggtcgaaccgaagacgcttcagaagattttgaaggcgatctcgggtgaaccg
gaagagccggtcatcagcacgatcatgctccgttcgatgcaacaggcgaagtacgatgac
gtctcgctcggccacttcggcctcgcgaccgacttctatacgcacttcacgtcgccgatc
cgtcgttacccggacttgattgtccatcgtctcatgcgcacgtacgccttcaacggtgac
ttgtcagagaagacgattgccaagtacgaggaccgtctcgactccatcgccgaacaggcg
tcgaagcgcgagcgtcgttcggtcgatgccgaacgcgagacgcaatccttgaagaaagcc
gagtacatggaatcacgtctcggtgaagagttcgacggcgtcgtcagcggtgtcacgaac
ttcggaatgttcatcgagctcccgaacacgattgaaggactcgttcgtctccagtcgatg
gatgactactaccacttcgacgagtcgcagctcatgttgctcggcgagcggacgaaacgt
cagttccgcatcggtgactcggtgcgcgtcaaggtcgacgccgtcaacttggacgagcgc
acgatcgacttcaccgtcgtcggcatgccgaagcgggaacagtcgcgccgtcgccaaccg
acgacgatcaaagcgacggaaggtcgtccgaagaaggatgacaaaaaaggccgcggccgt
gacgacaaacgtccgaagcgcggcaaaccgggtaaaccagggaaaccgggccaagccggg
aaaccgtcgaaaccaggcgagaaaccgaagacgtcgcaaggacgctcggcactcgacttg
aaaaagaaagacggtcaaaaacgaacaggcgacgccaaacgcggagcgaagaagcgtcgt
tga
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