Endosymbiont of Bathymodiolus septemdierum: BSEPE_0744
Help
Entry
BSEPE_0744 CDS
T04606
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ebh
Endosymbiont of Bathymodiolus septemdierum
Pathway
ebh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSEPE_0744 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebh03019
]
BSEPE_0744 (rnr)
03016 Transfer RNA biogenesis [BR:
ebh03016
]
BSEPE_0744 (rnr)
Enzymes [BR:
ebh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BSEPE_0744 (rnr)
Messenger RNA biogenesis [BR:
ebh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSEPE_0744 (rnr)
Transfer RNA biogenesis [BR:
ebh03016
]
Prokaryotic type
tRNA degradation factors
BSEPE_0744 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
BAS67738
UniProt:
A0A0P0USC3
LinkDB
All DBs
Position
706167..708287
Genome browser
AA seq
706 aa
AA seq
DB search
MSDPHQARESDKYENPIPSREYILEHVTKKPHSFYDLVDVLDVEGKQKKPLTHRLKAMVR
DQQLSMDRDEMYHIFDAERDIKVGTINANPKGFGFVILDEGGQDLRLSAYQMKQAFHGDR
VKARMLDNRGDSEIIEVLESRQSVVGRLHVSANESWIVVDDKRIVNNIIVSNVGNDNKNE
QIVVVSITKRPTLKELAEGEIIQVLGDYMDEGVETEAALYRNGIPVDFSEESLVETAQLP
TEVTDADREGRIDITDMKLVTIDGEDSRDFDDAVYAESNDNGWKLVVSIADVSHYVKEGS
ALDADAIERGNSVYFPRRVIPMLPEEISNGLCSINPDVERLCMTCEMQIDSEGNLVDSKF
YSAVMFSHARLTYTKVGKILEDHDQALTEEYAVVMDNLNDLYDLYKALKAARSRRGVMDF
DRIETQIVFDDNGKIEDILATSRNDAHKLIEECMLMANQATAKFLAKNDEDFLYRVHPKP
TAEKVEVTRQFLTAVGLTLEGGDQPETVHFAKVLEDAKGRDDENIIKTVVLRTMKQAIYT
PANEGHFGLAFEDYTHFTSPIRRYPDLLVHRAIKRVIAKATRKPSKRMVELGEELSVTER
RANEATRDVEQWLKCEYMRDKVGETFNGIISGIARFGIFIELTDIYTEGMISIRDMKDDF
YVFDEIHHKLSGQRTGKTFQLGDNIKIQVASVNLDERQMVFVLADD
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatccacatcaagcaagagaatcagacaagtacgagaatccaattccttcaagg
gaatacatccttgaacatgtgactaaaaagccacattccttttacgacttagttgatgtg
cttgatgttgaaggcaaacagaagaagccattaacgcaccgcctcaaagccatggttcgt
gaccagcagttaagtatggaccgtgatgaaatgtatcatatttttgatgcagaacgagac
attaaagtgggtactattaacgccaatccaaaaggtttcggctttgtgatattagatgag
ggcggtcaagatttgcgcctttctgcttatcaaatgaaacaagcctttcacggtgacaga
gtcaaagccagaatgcttgacaatcgtggtgattctgaaatcattgaagtgcttgaaagc
cgtcaatctgtcgtcggtcgcctgcatgttagcgctaacgagtcgtggattgtggtggat
gacaaacgcattgtgaataatatcattgttagtaatgtcggcaatgacaacaagaacgag
caaatcgttgttgtttcaatcaccaaaagaccaacccttaaagaacttgccgaaggagaa
attattcaagttttaggtgactatatggacgaaggtgttgaaactgaagccgcactttat
cgcaacggcatcccagtcgattttagtgaagaatctttggtagaaacagcgcaattgcca
acagaagtaacagatgcagatagagaaggtcgtattgacatcactgatatgaagttagta
acaattgacggtgaagattcacgcgattttgacgatgcggtttacgcagaatctaatgat
aatggttggaaattagttgtctctattgccgatgtttctcattatgtaaaagaaggctca
gcccttgatgcggatgcaattgagcgtggcaattcagtgtattttccgcgtcgcgtcatc
ccaatgttgcctgaagaaatctcaaatggactgtgttcaattaacccagatgttgagcgt
ttatgtatgacttgcgaaatgcaaattgattcggaaggtaatttggttgattccaaattc
tactcagccgttatgttttctcacgcacgcttgacttacaccaaagtcggtaaaatttta
gaagaccatgaccaagcattgacagaagaatacgctgtcgtaatggacaatcttaatgat
ttatacgatttatacaaagccttaaaagcggctagaagtcgccgtggagtaatggacttc
gaccgcatcgaaacgcaaatcgttttcgatgacaacggaaaaattgaagacatccttgcc
acttctcgcaacgacgcacacaaactcattgaagaatgtatgttgatggcaaaccaagcc
accgctaaattcttagccaaaaatgatgaagatttcttatatcgtgtccaccccaaacca
accgcagaaaaagttgaggttactcgccaattcctaaccgcagtcggtttaacgcttgaa
ggtggcgatcagccagaaaccgttcacttcgctaaagtcctagaagacgccaaaggtcgt
gatgatgaaaacattattaagactgtcgttctacgcaccatgaagcaagccatttacacc
ccagctaatgagggtcattttggtttagcctttgaagattacacgcatttcacctcgcca
atccgtcgctaccccgacctattggtacatcgcgccatcaaacgcgtcattgctaaagcc
accagaaaaccaagcaaacgcatggttgaacttggcgaagaactctctgtcaccgaacgc
agagccaacgaagccactcgcgatgttgagcaatggctaaaatgcgaatatatgcgcgat
aaagtcggtgaaacttttaatggtattatctctggcattgctcgttttggcatttttatt
gagcttactgatatttatacagaaggaatgatttctattcgtgatatgaaagacgatttt
tatgtatttgatgaaattcatcataaactcagcgggcaacgcactggtaaaactttccag
ctaggcgataacattaaaatccaagttgcatctgttaatttggatgagcgccaaatggtc
tttgtgttagctgatgattaa
DBGET
integrated database retrieval system
