Equus caballus (horse): 100070836
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Entry
100070836 CDS
T01058
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ecb
Equus caballus (horse)
Pathway
ecb03015
mRNA surveillance pathway
ecb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100070836 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
100070836 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100070836 (PABPC1L)
03041 Spliceosome [BR:
ecb03041
]
100070836 (PABPC1L)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100070836 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
100070836 (PABPC1L)
Spliceosome [BR:
ecb03041
]
Complex C
Other components
Complex C specific factors
100070836 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
Nup35_RRM
RRM_occluded
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
100070836
NCBI-ProteinID:
XP_014590661
Ensembl:
ENSECAG00000022681
VGNC:
51583
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All DBs
Position
22:34970708..34990991
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AA seq
617 aa
AA seq
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MNASGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRRERE
AELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEK
HEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKN
LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGT
KPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPFLGSFQQPTSYFLPAMAQPPAQAEH
YGSSPSRQPAPRWTAQPPRPSSAYPPAASMVRPPAMSRRPLAQVCSVRQTSTQVPYLVPH
TQRVANIGTQTPGPGGAGCSTPGRSLPTHRYFLATPNTHEVQEPAVRILGPEPLTASMLA
AAPLHQQKQMIGERLYPLIYEVHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEAL
AVLQAHQAMEQTKVNVH
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggcgcgggctacccgctcgcctcgctctacgtgggcgacctgcacccc
gacgtgaccgaggccatgctctacgagaagttctcgcccgccggccccatcctgtccatc
cgcgtgtgccgcgacgtggccacccgccgctcgctgggttacgcctatatcaacttccag
cagccggccgacgcggagcgggcactggacacaatgaactttgaggtgatcaaaggccag
cccatccgcatcatgtggtcccagcgagacccaggacttcgcaagtcgggtgtgggcaac
gtcttcatcaagaacctggaggactccatcgacaacaaggccttatatgacaccttctcc
acctttgggaacatcctctcctgcaaggtggtgtgtgacgatcacggctcccgaggcttt
ggctttgtccattttgagacccatgaggctgcgcagcaggccatcagcaccatgaacggg
atgctgctgaatgaccgcaaagtcttcgttggccacttcaaatcccgacgggagcgagag
gcggagctgggggcccgggccacagcgttcaccaacatctacgtgaagaacctcccgggg
cacgtggacgagcggggcctgcaggatctgttctcccagtttgggaagatgctgagtgtg
aaggtgatgagggatgacagcggccactcccggggctttggctttgtcaactttgagaag
catgaggaagcccagaaggctgtgatggacatgaacgggatgcaggtgagtgggcggctg
ctctacgtgggccgggcccagaagcggggggagcggcagaatgagctgaagcgcaggttt
gagcacacgaagcaggaccggctgaaccgctgccagggcgtgaacttgtatgtgaagaac
ctggatgactccatcgatgatgagaaactcaggaaagagttctctccttatggagtgatt
accagtgccaaggtgatgacagagggtggccacagcaaggggtttggctttgtgtgtttt
tcctctccagaagaggcgacgaaggctgtgacagagatgaacgggcgcatcatcggcacc
aagccactgtacgtggcgctggcccagcgcaaagaggagcggaaggccatccttaccaac
cagtacatgcagcgcctctccaccatgcgggccctgggcggccccttcttgggctccttc
cagcagcccaccagctacttcctgcccgccatggcccagcctccagcccaggctgagcac
tatggctcaagcccatccaggcagcctgcccccaggtggacggcccagccacctagaccc
tcgtctgcctaccctccagctgcctccatggtccggccaccagccatgtctcggcgtccc
ctggcccaggtctgcagtgtcaggcagacctctacccaggtgccatacctggtgccccac
acccagagagtggccaacattggtacccagaccccaggacctggtggggcaggatgctcg
acaccaggcaggtctctcccgacacacagatatttcttggcaacgcccaacacgcatgag
gtccaggagcctgctgtgcgtatcctgggaccggagcccctgaccgcgtccatgctggct
gctgcaccactgcaccagcaaaagcagatgattggtgagcgtctctacccccttatctac
gaagtccacacccagctggctggtaagatcacgggcatgctgctagagatcgacaactcg
gagctgctgctcatgctggagtcgccggagtccctcaatgccaaggtagaagaggctttg
gcagtgttgcaggcacaccaggccatggagcagacaaaagtgaatgtgcactga
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