Escherichia coli O6 K2 H1 CFT073 (UPEC): c3920
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Entry
c3920 CDS
T00106
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ecc
Escherichia coli O6:K2:H1 CFT073 (UPEC)
Pathway
ecc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
c3920 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecc03019
]
c3920 (pnp)
03016 Transfer RNA biogenesis [BR:
ecc03016
]
c3920 (pnp)
Enzymes [BR:
ecc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
c3920 (pnp)
Messenger RNA biogenesis [BR:
ecc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
c3920 (pnp)
Transfer RNA biogenesis [BR:
ecc03016
]
Prokaryotic type
tRNA degradation factors
c3920 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
aRib
KH_2
DUF2110
SLS1_KH2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AAN82361
UniProt:
Q8FD87
LinkDB
All DBs
Position
complement(3742666..3744888)
Genome browser
AA seq
740 aa
AA seq
DB search
MSLVARMRRRSGINTSTVRYCLRKRKDITLLNPIVRKFQYGQHTVTLETGMMARQATAAV
MVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLI
ARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGA
ARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQ
QQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVD
VIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRT
GVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETG
MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALM
DAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKI
EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGK
GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYNGKVTR
IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE
ATEQSQPAAAPEAPAAEQGE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
ttgtcattagtcgcgaggatgcgcagaagatcgggtattaacaccagtaccgtaaggtac
tgtctaagaaagagaaaggatattacattgcttaatccgatcgttcgtaaattccagtac
ggccaacacaccgtgactctggaaaccggcatgatggctcgtcaggctactgccgctgtt
atggttagcatggatgacaccgcggtatttgttaccgttgttggtcagaaaaaagccaaa
ccaggtcaggacttcttcccgctgaccgttaactatcaggagcgtacctacgctgctggt
cgtatcccgggtagcttcttccgtcgtgaaggccgcccaagcgaaggcgaaaccctgatc
gcgcgtctgattgaccgcccgattcgcccgctgttcccggaaggcttcgtcaacgaagtt
caggttatcgccaccgtggtttctgttaacccgcaggttaacccggatatcgtcgcgatg
attggtgcttccgcagcactgtctctgtctggtattccgttcaatggcccgattggtgct
gcccgtgtaggttacatcaatgaccagtacgtactgaacccgactcaggacgaactgaaa
gagagcaaactggacctggttgttgccggtacagaagctgccgtgctgatggttgaatct
gaagctgaactgctgagcgaagaccaaatgctgggcgcagtggtgttcggtcatgaacaa
cagcaggttgttattcagaacatcaatgaactggtgaaagaagccggtaaaccgcgttgg
gattggcagccggagccggtaaacgaagcgctgaacgcgcgcgttgctgcgctggctgaa
gctcgtctgagcgatgcttaccgcatcaccgacaaacaagagcgttatgcgcaggttgat
gtcatcaaatctgaaaccatcgcgacactgcttgctgaagacgaaaccctggacgaaaac
gaactgggtgaaattctgcacgctatcgagaaaaatgttgttcgtagccgcgtactggca
ggcgaaccgcgtatcgacggtcgtgaaaaagatatgatccgtggtctggatgtgcgtact
ggtgtgctgccgcgtactcacggttctgcgctgttcacccgtggtgaaacgcaggcgctg
gttaccgcaacgctgggtactgctcgtgacgcgcaggttcttgatgaactgatgggcgaa
cgtaccgataccttcctgttccactacaacttccctccgtactccgtaggcgaaaccggc
atggtcggttctccgaagcgtcgtgaaattggtcacggtcgtctggcgaagcgcggcgtg
ctggcagtaatgccggatatggacaaattcccgtacaccgtacgtgttgtgtctgaaatt
accgaatccaacggttcctcttctatggcttccgtgtgcggcgcgtctctggcgctgatg
gacgcaggtgtgccaatcaaagctgccgttgcgggtatcgcaatgggtctggtgaaagaa
ggcgacaactacgttgtactgtctgacattttgggcgacgaagatcacctgggcgatatg
gacttcaaagttgcgggttcccgtgacggtatctctgcattgcagatggatatcaaaatt
gaaggtatcaccaaagagatcatgcaggttgcactgaaccaggctaaaggtgcgcgtctg
catatcctgggggtaatggaacaggcgatcaacgcgccgcgtggcgatatctctgagttc
gcaccgcgtatccataccatcaagatcaacccggacaagatcaaagatgttatcggtaaa
ggcggttctgtaatccgtgctctgaccgaagaaaccggcaccaccatcgaaattgaagat
gacggtactgtgaagattgcagcgaccgacggcgagaaagcgaaacacgcgattcgtcgt
atcgaagagatcactgcagaaatcgaagtgggccgcgtctacaatggtaaagtgacccgt
atcgttgattttggcgcatttgttgccattggtggcggtaaagaaggtctggtccacatc
tctcaaatcgctgataaacgcgttgagaaagtgaccgattacctgcagatgggtcaggaa
gtaccggtgaaagttctggaagttgatcgccagggccgtatccgtctgagcattaaagaa
gcgactgagcaatctcaacctgctgcagcaccggaagctccggctgctgaacagggcgag
taa
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