Escherichia coli O127 H6 E2348/69 (EPEC): E2348C_1176
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Entry
E2348C_1176 CDS
T00796
Symbol
rne
Name
(GenBank) fused ribonuclease E: endoribonuclease/RNA-binding protein/RNA degradosome binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ecg
Escherichia coli O127:H6 E2348/69 (EPEC)
Pathway
ecg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2348C_1176 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecg03019
]
E2348C_1176 (rne)
03009 Ribosome biogenesis [BR:
ecg03009
]
E2348C_1176 (rne)
Enzymes [BR:
ecg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E2348C_1176 (rne)
Messenger RNA biogenesis [BR:
ecg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E2348C_1176 (rne)
Ribosome biogenesis [BR:
ecg03009
]
Prokaryotic type
rRNA processing factors
E2348C_1176 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CAS08724
UniProt:
B7UPA0
LinkDB
All DBs
Position
complement(1225511..1228696)
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA
PTPAEPAAPVVAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQPAPKAEA
KPERQQDRRKPRQNNRRDRNERRDSRSERTEGSDNREENRRNRRQAQQQTVETRESRQQA
EVTEKARTTDEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQAAPEQ
QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG
KVWIRYPIVRPQDVQVEEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEVAEVVEAPV
QIAEPQPEVVETTHPVVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEV
AETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVP
EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctgtatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aactacagtgctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatc
agtctggcgggtagctatctggttctgatgccgaacaacccgcgcgcgggtggcatttct
cgtcgtatcgaaggcgacgaccgtaccgaattaaaagaagcactggcaagccttgaactg
ccggaaggcatggggcttatcgtgcgcaccgctggcgtcggcaaatctgctgaggcgctg
caatgggatttaagcttccgtctgaaacactgggaagccatcaaaaaagccgctgaaagc
cgcccagctccgttcctgattcatcaggagagcaacgtcatcgttcgcgcattccgcgat
tacttacgtcaggatatcggcgaaatccttatcgataacccgaaagtgctcgaactggca
cgccagcatatcgctgcattaggtcgcccggatttcagcagcaaaatcaaactgtacacc
ggcgagatcccgctgttcagccactaccagattgagtcacagattgagtccgccttccag
cgtgaagttcgtctgccatctggtggttccattgttatcgacagcaccgaagcgttaacc
gccatcgacatcaactccgcacgcgcgacccgcggcggcgatatcgaagaaaccgcgttt
aacaccaacctcgaagctgccgatgagattgctcgtcagctgcgcctgcgtgacctcggc
ggcctgattgttatcgacttcatcgacatgacgccagtacgccaccagcgtgcggtagaa
aatcgtctgcgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttct
cgctttggcctgctggaaatgtcccgtcagcgtctgagcccatcactgggtgaatccagc
catcacgtctgcccgcgctgctccggtaccggtaccgtgcgtgacaacgaatcgttgtcg
ctctctattctgcgtctgatcgaagaagaagcgctgaaagagaacactcaggaagttcac
gccattgttcctgtgccaatcgcgtcttacctgctgaatgaaaaacgttctgcagtgaat
gcgattgaaactcgtcaggacggcgtgcgctgtgtgattgtgccaaacgatcagatggaa
accccgcactaccatgtgctgcgcgtgcgtaaaggggaagaaactccaaccttaagctac
atgctgccgaagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaa
cgtaagcgtccggaacaacctgcgctggcaacctttgccatgccggatgtgccgccagct
ccaaccccagctgaacctgccgcgcctgttgtagccccagcacctaaagctgcaacggca
acaccagcatctcctgcacaaccagggttgttgagccgcttcttcggcgcactgaaagcg
ctgttcagcggtggtgaagaaaccaaaccggccgagcaaccagcaccgaaagcagaagcg
aaaccggaacgtcaacaggatcgtcgcaagcctcgtcagaacaaccgccgtgaccgtaat
gagcgccgcgactcccgtagtgaacgtacagaaggcagcgataatcgcgaagaaaaccgt
cgtaatcgtcgccaggcacagcagcagactgtcgagacgcgtgagagccgtcagcaggct
gaggtaacggaaaaagcgcgtaccaccgacgagcagcaagcgccgcgtcgtgaacgtagc
cgccgccgtaacgatgataaacgtcaggcgcaacaagaagcgaaggcgctgaatgttgaa
gagcaatctgttcaggaaaccgaacaggaagaacgtgtacgtccggttcagccgcgtcgt
aaacagcgtcagctcaatcagaaagtgcgttacgagcaaagcgtagccgaagaagcggta
gtcgcaccggtggttgaagaaactgtcgctgccgaaccaattgttcaggaagcgccagct
ccacgcacagaactggtgaaagtcccgctgccagtcgtagcgcaagctgcaccagaacag
caagaagagaacaatgccgataaccgtgacaacggtggcatgccgcgtcgttctcgccgc
tcgcctcgtcacctgcgcgtgagtggtcagcgtcgtcgtcgctatcgtgacgagcgttat
ccaacccaatcgccaatgccgttgaccgtagcttgcgcatctccggaactggcctctggc
aaagtctggatccgctatccaattgtacgtccgcaagatgtacaggtcgaagagcagcgc
gaacaggaagaagtacaagtgcagccgatggtgactgaggtccctgtcgccgccgctgtc
gaaccggttgttagcgcgccagttgttgaagaagtggctgaagtcgtagaagcccccgtt
cagattgccgaaccgcaaccggaagtggttgaaacgacgcatcctgtagtaattgccgcc
gcggtaactgaacagccgcaggtgattaccgagtctgatgttgccgtagcccaggaagtt
gcagaacacgcagaaccggtagttgaaccgcaggaagagacggcagatattgaagaagtt
gccgaaactgctgaggttgtggttgctgaacctgaagttgttgctcaacctgccgcgcca
gtcgtcgctgaagtcgcagcagaagttgaaacggtagccgcggttgaaccagagatcacc
gttgagcataaccacgctaccgcgccaatgacgcgcgctccggcaccggaatatgttccg
gaggcaccgcgtcacagtgactggcagcgccctacttttgccttcgaaggcaaaggtgcc
gcaggtggtcatacggcaacgcatcatgcctctgccgctcctgcgcgtccgcaacctgtt
gagtaa
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