Escherichia coli ATCC 8739: EcolC_3511
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Entry
EcolC_3511 CDS
T00697
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ecl
Escherichia coli ATCC 8739
Brite
KEGG Orthology (KO) [BR:
ecl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecl03019
]
EcolC_3511
Enzymes [BR:
ecl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EcolC_3511
Messenger RNA biogenesis [BR:
ecl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EcolC_3511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
AAA_22
Hemerythrin
Motif
Other DBs
NCBI-ProteinID:
ACA79125
LinkDB
All DBs
Position
complement(3835259..3837733)
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AA seq
824 aa
AA seq
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MLQCGAKNVNPLERFVSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP
GINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLT
RMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQ
QMLPEAPVVISEGRSFPVERRYLPLPAHQRFDEAVAVATAEMLRQESGSLLLFLTGVGEI
QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR
LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERAA
AQSEPEILQSDLSGLLMELLQWGCSDPTQMSWLDQPPTVNLLAAKRLLRMLGALDGERLS
AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW
QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDADDA
LSRHEWLIAPLLLQGSASPDARILLALPVDIDELVRRCPQLVQQSDTVEWDDAQGTLKAW
RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP
EYDWPAVDNESLLATLETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA
HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT
RDLSAFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgctacaatgtggcgcgaagaatgttaaccctctggagcgttttgtgtcgtcgttgccc
gttgctgccgtcttacctgaattacttaccgctctcgattgtgcgccgcaggtattatta
agtgcgccgaccggggccgggaaatcaacctggctgccgctgcaattgctggcgcatccc
ggcattaacggaaaaattatcctgctggagccgcgtcgtctggcggcgcgtaacgtcgcg
caacggctggcggagctgcttaacgaaaagccaggcgataccgttggctaccggatgcgt
gcgcaaaactgcgtcgggccgaatacccgcctggaagtagttaccgaaggcgtgctgacg
cggatgatccagcgtgacccggaactgagcggtgttggactggtgatccttgatgaattt
catgagcgcagcttgcaggcggatttggcgttggcgctgttactcgatgtgcaacaaggt
ctgcgtgatgaccttaaactgctgattatgtcggctacgctggacaacgaccgcttgcag
caaatgctgccagaagcgcccgtcgtcatctcagaagggcgctcgtttccggttgaacgc
cgttatttaccgctgcccgcgcatcagcgttttgacgaagccgtcgcggttgccaccgcc
gaaatgctgcgtcaggaaagtggatcattactgttatttttaactggcgtcggagaaatt
cagcgtgtgcaggaacaactggcttcgcgcatcggcagtgatgtgttgctctgcccgctg
tatggcgcgttgtcgctgaacgatcagcgaaaagcgatcctcccggcaccgcaagggatg
cgcaaagtggtgctggcgaccaatattgctgaaaccagtttaaccatcgaaggtattcgt
ctggtggtggattgtgcccaggagcgtgtggcgcgctttgatccgcgcacggggcttacg
cggctgattactcaacgcgttagccaggcatccatgacgcagcgtgccgggcgcgccggg
cgtctggagccgggtatctgcctgcatttaatcgccaaggaacaagcagaacgcgccgcg
gcgcaaagtgaaccggaaatattacaaagcgatctttccggtttgctgatggaattactg
caatggggatgcagcgatccgacgcagatgagctggctggatcaaccgccaacggtgaat
ctactggccgcgaaacgcctgttacggatgctgggggcgctggacggtgaacggcttagt
gcgcaagggcaaaaaatggcagcgctgggtaacgatccgcgtttagcggcaatgctggtt
agcgcgaagaacgacgacgaagctgctaccgcggcaaaaattgccgccattctcgaagag
ccgccacggatgggcaatagtgacctgggcgtggcgttttcgcgcaatcaaccagcctgg
cagcaacgtagtcagcaactgttaaaacgcttaaacgtacgcggcggtgaggcagacagt
tcgcttatcgcgccgctacttgccggggcgtttgccgatcgcattgctcgccgccgtggg
caagatggacgctatcaactggcaaacggcatgggagcgatgctcgatgccgacgacgcg
ctaagccgccacgaatggttgatcgcaccgttattattgcagggcagcgcctcgccggat
gcgcggattttactggcgctaccggtcgatattgatgaattagtgcgacgctgtccgcag
ctggtgcagcaatctgacaccgtggaatgggatgacgcgcaaggtacgctgaaagcctgg
cgtcggctgcaaatcggtcagttgacggtgaaagtgcagccgttggcgaaaccgtcagaa
gacgagttgcatcaggcgatgcttaatggcatccgtgataaaggtttaagcgtgctcaac
tggacggcggaagcggaacagctacgcttgcgtttgttatgcgccgcaaagtggttgccg
gaatatgactggcctgcggttgataatgaaagtttgttggcgacgctggaaacgtggctg
ctgccacatatgaccggcgtgcattcactacgcggcctgaaatcactcgacatttatcag
gcactacgcggattacttgattggggaatgcagcaacgtctggatagtgaattgcctgcg
cattacactgtgccgacgggaagccggatcgccattcgttatcatgaagataacccgccc
gcgctggcggtgagaatgcaggagatgtttggtgaggccaccaatccgacgatcgcccag
gggcgcgtgccgctggtgctggagttgctttcccctgcccaaaggccattacaaatcaca
cgagatttgagcgccttctggaaaggagcgtaccgtgaggtgcaaaaagagatgaaaggg
cgttatcccaaacatgtctggccggacgacccggcaaacactgcaccgacgcgacggacg
aaaaagtattcgtaa
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