Escherichia coli ATCC 8739: EcolC_3969
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Entry
EcolC_3969 CDS
T00697
Definition
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
ecl
Escherichia coli ATCC 8739
Pathway
ecl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EcolC_3969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecl03400
]
EcolC_3969
DNA repair and recombination proteins [BR:
ecl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EcolC_3969
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EcolC_3969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_23
AAA_25
cobW
NACHT
DUF2075
Viral_helicase1
ScfRs
Motif
Other DBs
NCBI-ProteinID:
ACA79570
LinkDB
All DBs
Structure
PDB:
4DFC
Thumbnails
Position
4359981..4362803
Genome map
AA seq
940 aa
AA seq
DB search
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP
KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL
SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY
MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH
VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV
PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR
QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE
SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggataagatcgaagttcggggcgcccgcacccataatctcaaaaacatcaacctcgtt
atcccccgcgacaagctcattgtcgtgaccgggctttcgggttctggcaaatcctcgctc
gctttcgacaccttatatgccgaagggcagcgccgttacgttgaatccctttccgcctac
gcgcggcagtttctgtcactgatggaaaagccggacgtcgatcatattgaggggctttct
cctgccatctcaattgagcagaaatcgacgtctcataacccgcgttctacggtggggaca
atcaccgaaatccacgactatttgcgtttgttgttcgcccgcgttggcgagccgcgctgt
ccggaccacgacgtcccgctggcggcgcaaaccgtcagccagatggtggataacgtgctg
tcgcagccggaaggcaagcgtctgatgctactcgcgccaatcattaaagagcgcaaaggc
gaacacaccaaaacgctggagaacctggcaagccagggctacatccgtgctcgtattgat
ggcgaagtctgcgatctttccgatccgccaaaactggaactgcaaaagaaacataccatt
gaagtggtggttgatcgcttcaaggtgcgtgacgatcttacccaacgtcttgccgagtca
tttgaaaccgcgctggagctttccggtggtaccgcggtagtggcggatatggacgacccg
aaagcggaagagctgctgttctccgccaacttcgcctgcccaatttgcggctacagtatg
cgtgaactggagccgcgactgttttcgtttaacaacccggcgggggcctgcccgacctgc
gacggccttggcgtacagcaatatttcgatcctgatcgagtgatccagaatccggaactg
tcgctggctggtggtgcgatccgtggctgggatcgccgcaacttctattatttccagatg
ctgaaatcgctggcagatcactataagttcgacgtcgaagcgccgtggggcagcctgagc
gcgaacgtgcataaagtggtgttgtacggttctggcaaagaaaacattgaattcaaatac
atgaacgatcgtggcgatacctccattcgtcgtcatccgttcgaaggcgtgctgcataat
atggagcgccgctataaagagacggaatccagcgcggtacgcgaagaattagccaagttt
atcagtaatcgtccgtgcgccagctgcgaagggacgcgtctgcgtcgggaagcgcgccac
gtgtatgtcgagaatacgccgctgcctgctatctccgacatgagcattggtcatgcgatg
gaattcttcaacaatctcaaactcgcaggtcagcgggcgaagattgcagaaaaaatcctt
aaagagatcggcgatcgtctgaaattcctcgttaacgtcggcctgaattacctgacgctt
tcccgctcggcagaaacgctttctggcggtgaagcacagcgtatccgtctggcgagccag
attggtgcgggcctggttggcgttatgtacgtgctggacgagccgtctatcggcctgcac
cagcgtgataacgagcgcctgttgggtacgcttatccatctgcgcgatctcggtaatacc
gtgattgtggtggagcacgacgaagacgcaattcgcgccgctgaccatgtgatcgacatt
ggcccgggcgcaggtgttcacggcggtgaagtggtcgcagaaggtccgctggaagcgatt
atggcggtgccggagtcgttgaccgggcagtacatgagcggcaaacgcaagattgaagtg
ccgaagaaacgcgttccggcgaatccggaaaaagtgctgaagctgacaggcgcacgcggc
aacaacctgaaggacgtgacgctgacgctgccggtgggtctgtttacctgcatcaccggg
gtttcaggttccggtaaatcgacgctgattaacgacacgctgttccctattgcccaacgc
cagttgaatggtgcgaccatcgccgaaccggcaccgtatcgcgatattcaggggctggag
catttcgacaaagtgatcgatatcgaccaaagcccaattggtcgtactccgcgttctaac
ccggcgacctataccggcgtgtttacacctgtgcgcgaactttttgcgggcgtaccggaa
tcccgtgcgcgtggttatacgccaggacgtttcagctttaacgtccgtggcggacgctgc
gaagcctgtcagggcgacggtgtgatcaaagtggagatgcacttcctgccggacatttac
gtaccgtgcgaccagtgtaaaggtaaacgctataaccgtgaaacgctggaaattaagtac
aaaggcaaaaccatccacgaagtgctggatatgaccatcgaagaggcgcgtgagttcttt
gatgccgtacctgcactggcgcgtaagctgcaaacgttgatggacgttggcctgacgtac
attcgcctggggcagtccgcaaccaccctttctggtggtgaagcccagcgcgtgaagctg
gcgcgtgagctgtcaaaacgcggcaccgggcagacactgtatattctcgacgagccgacc
accggtttgcacttcgccgatattcagcaactgctcgacgtgctgcataaactgcgcgat
cagggcaataccattgtggtaattgagcacaatctcgacgtgattaaaaccgctgactgg
attgtcgacctgggaccggaaggcggcagtggcggcggcgagatcctcgtctccggtacg
ccagaaaccgtcgcggagtgcgaagcttcgcatacggcgcgcttcctcaagccgatgctg
taa
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integrated database retrieval system
