Paremcibacter congregatus: FIV45_07215
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Entry
FIV45_07215 CDS
T06024
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ecog
Paremcibacter congregatus
Brite
KEGG Orthology (KO) [BR:
ecog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecog03016
]
FIV45_07215 (rnd)
Enzymes [BR:
ecog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FIV45_07215 (rnd)
Transfer RNA biogenesis [BR:
ecog03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FIV45_07215 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QDE27080
LinkDB
All DBs
Position
complement(1629415..1630605)
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AA seq
396 aa
AA seq
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MSVITSNDQLQALCDRLSTSEYITVDTEFLRDKTYYSKLCLIQVANEEEYHAIDTLAPGI
DLEPFYDLMRNENIIKVFHASRQDIEIFVVEKGVVPKPLFDSQVAAMVCGYGDSIGYEKL
VLSLANATLDKSTRITDWSRRPLSQRQIDYALGDVTHLRVIYKKLKAQLEKSGRSAWLVE
EMAELSDPETFIIRPENAWKRLKIRSSNRLFNAVARELAEWREKEAQSRNLPRNRVMRDE
VLLEVSAVRPEHANALGSIRGLSPQFSKSKSGDRLLEIIKDISARPADELPAISRRRPPA
QNTDPVMELLKVLLKLICQRENVAPKLIASVDDLEKLAENDDADIQALSGWRYDLFGKAA
LAVKRGEMGFVLQDGEVTLVDMTAAPQDDDTAQDAD
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcatcacatcaaacgaccagttacaagccctgtgcgatcgtctcagcacgtca
gaatatatcaccgtcgacaccgagttcctgcgggataagacctattattccaagctctgc
ctgatccaggtggccaatgaagaagaatatcacgccatcgacacgctggcccccggcatt
gatcttgaacctttttacgacctgatgcgcaatgaaaatatcatcaaggtttttcacgcc
tcacgtcaggacatcgaaattttcgtggttgaaaaaggcgtggtgcccaaaccgctgttc
gattctcaggtcgcggccatggtctgtggttacggcgacagcatcggctatgaaaagctg
gtgctcagcctcgccaatgccaccctggacaaaagcacccgcatcaccgactggtcgcgc
cggcccttgagccagcgccagattgactatgctcttggtgatgtgacccatctgcgggtg
atttacaagaaattgaaagcccagcttgaaaaaagcggcagaagcgcctggctcgtcgag
gagatggcggaactttccgatccggaaacctttatcatccgaccggaaaacgcctggaaa
cgtcttaaaatccgcagcagcaaccgtctgtttaacgccgtcgcccgcgaactggccgaa
tggcgcgaaaaagaagcccagagccgcaatctgccccgcaaccgggtgatgcgcgatgaa
gtgctgcttgaagtttccgccgtacggcctgaacatgccaatgcccttggcagcatccgc
ggcctgtcgccgcagttcagcaagagcaaaagcggcgaccgtctgctggaaatcatcaag
gacatctccgcccgtccggccgatgaactgccggccatttcccgccgacgccccccggcc
cagaataccgatccggtaatggaattgctgaaagtgctgctgaaactgatctgtcagcgt
gagaatgtcgccccgaagctgattgcgtcggtcgatgatcttgaaaagctcgccgaaaat
gatgatgccgatattcaggccctgtcgggatggcgctatgacttgtttggcaaggcggcg
ctggccgttaaacgcggcgagatgggctttgtgctgcaagacggcgaagtcactctggtg
gacatgaccgccgcccctcaagacgatgacacagcccaagacgctgactaa
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