KEGG   Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_2049
Entry
ECRM13516_2049    CDS       T03011                                 
Symbol
lhr
Name
(GenBank) putative ATP-dependent helicase lhr
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ecoh  Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:ecoh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ecoh03400]
    ECRM13516_2049 (lhr)
Enzymes [BR:ecoh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ECRM13516_2049 (lhr)
    5.6.2.6  RNA 3'-5' helicase
     ECRM13516_2049 (lhr)
DNA repair and recombination proteins [BR:ecoh03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    ECRM13516_2049 (lhr)
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C ResIII Lhr_WH DDRGK
Other DBs
NCBI-ProteinID: AHG14716
LinkDB
Position
2039279..2043895
AA seq 1538 aa
MADNPNPSSPLPDVFSPATRDWFLRAFKQPTAVQSQTWHVAARGEHALVIAPTGSGKTLA
AFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLQGIADERRRRG
ETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDE
VHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPA
MRHPQIRIVVPVANMDDVSPVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTN
SRGLAEKLTARLNELYAARLQRSPSIAADAAHFESTSGATSNRVQSSDVFIARSHHGSVS
KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV
GGISKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVD
EWYSRVRRAAPWKDLPRRVFDATLDMLSGRYPSGDFSAFRPKLVWNRETGILTARPGAQL
LAVTSGGTIPDRGMYSVLLPEGEEQAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQI
TRDQVIVTPAPGRSARLPFWRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEEN
TIANIQGLIDEQRNATGIVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWALAIAGR
IHALWGADASVVASDDGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARF
RECAARALLMPGRTPGHRTPLWQQRLRASQLLEIAQGYPDFPVILETLRECLQDVYDLPA
LERLMRRLNGGEIQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLSLDSEL
LRNLLGQVDPGELLDPQVIRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRH
TGSSEEIASYLENLLTVKRIFPAMISGQERLACMDDAARLRDALGVQLPESLPEIYLHRV
SYPLRDLFLRYLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMNLQQDIWVSDEV
FRRLRLRSLQAAREATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVM
RVIEQLAGVGLPASLWESQILPARVRDYSPEMLDELLATGAVIWSGQKKLGEDDGLVALH
LQEYAAESFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDPSALQE
ALWALVWQGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPVSPRVSYNTPN
LAGRWSLLQVEPLNDTERMLALAENMLDRYGIISRQAVIAENIPGGFPSMQTLCRSMEDS
GRIMRGRFVEGLGGAQFAERLTIDRLRDLATQAAQTRHYTPVALSANDPANVWGNLLPWP
THPATLVPTRRAGALVVVSGGKLLLYLAQGGKKMLVWQEKEELLAPEVFHALTTALRREP
RLRFTLTEVNDLPVRQTPMFTLLREAGFSSSPQGLDWG
NT seq 4617 nt   +upstreamnt  +downstreamnt
atggcagataatccaaacccttcatcgcccctgccggacgtgttttcaccggcgacccgc
gactggtttcttcgcgcctttaaacagccgaccgctgtccagtcgcaaacctggcatgtg
gcggcgcgaggcgaacatgcgctggtgattgcaccgaccggctccgggaaaacgctggca
gcatttctctacgccctcgatcggctcttccgcgaaggcggcgaagatacccgcgaggcg
cataagcgtaaaacctcacgcattctctatatttcaccgataaaagccctgggcaccgac
gttcagcgcaacttacagatcccgttacagggtattgccgatgaacggcggcggcgcggc
gaaacggaagtcaatcttcgcgtggggatccgtactggcgatacgcctgcacaggaacgc
agcaaactcacccgtaatccgccggatattctgatcaccacacccgaatcactctatctg
atgctgacctcccgcgcgcgcgaaacgctacgcggcgtcgaaacggtaattattgatgaa
gtccacgcggtagcgggcagtaaacgtggtgcgcatctggcgttaagtctggagcggctc
gatgcgctgctccacacctcagcacagcgaattggcctttctgccactgtgcgctcagcc
agcgatgtggcagcatttcttggcggcgatcgcccggttacggtagtcaacccgcccgca
atgcgccatccgcagatacggattgtcgtaccagtcgccaatatggatgatgtctcaccg
gtcgccagcggcactggcgaagacagccatgccggccgggaaggctccatctggccatat
attgaaacgggtatccttgatgaagtgttgcgccatcgctcgaccattgtctttactaat
tcgcgggggctggcggaaaaactgacggcacgattaaatgagctttacgccgcacgctta
cagcgttccccgtctatcgccgctgatgcggcccatttcgagtcgacctctggcgcaacc
tctaaccgtgtacaaagtagcgacgtttttattgcccgctcacaccacggctccgtctct
aaagaacaacgagcaatcaccgagcaggcgctgaaatcgggtgagttacgctgcgtggtc
gcaacttccagtctcgaactggggattgatatgggcgctgtggatctggtgattcaggtg
gcaacgccgctttctgttgccagtgggttacaacgcattggacgtgccggacaccaggta
ggaggtatctccaaagggctttttttcccccgaacccggcgtgacttagtcgattccgca
gtcattgtagagtgtatgttcgcaggcaggctggaaaacctgacacctccgcataatcca
ctcgacgtccttgcgcagcaaaccgttgccgccgcggcgatggatgcattacaggtagac
gaatggtactcccgcgtacgccgtgccgcaccgtggaaagatctgccaagacgtgttttt
gacgccacgctggatatgctttccgggcgctatccctctggcgatttttctgcttttcga
ccaaaactggtctggaacagggagaccgggatattgaccgcccgacctggcgctcagctg
ttggcagttaccagcggtggcaccattccggatcgtggcatgtatagcgtgttattaccc
gaaggtgaagaacaggccggttcgcggcgggtgggtgaactggatgaggagatggtatat
gagtcgcgggtgaacgatattatcactctcggcgcaacctcatggcggatccagcaaatc
acccgcgatcaggtgattgtgactcctgctccgggtcgttctgcccggctccccttctgg
cgtggtgaaggtaacggacgtccggctgaattaggcgagatgattggcgattttcttcat
ttgctggcggatggagcgttcttttccgggactattcccccgtggctggctgaagaaaat
acgatcgccaatattcaggggttgattgacgagcagcgcaacgcgacgggcatcgttccg
gggagtcgtcatctggtcctcgaacggtgccgtgatgaaattggcgactggcgtattatt
ttgcactctccctatggaagacgggtgcatgaaccttgggcgctggcgattgccgggcga
atacatgcgctatggggcgctgatgcgtctgtggtcgccagtgatgacggcattgttgcg
cgcattcctgacactgatggtaaattgcctgacgccgcgatttttttgtttgaaccagaa
aagttgctgcaaattgtccgcgaggcggtaggcagctcagcacttttcgccgcccgtttt
cgcgaatgcgccgcgcgggcgttattaatgccgggccgcacgccgggccatcgcaccccg
ctctggcaacaacggctgcgcgccagtcagttgctggaaatcgctcagggatatccggat
tttccggtcattctcgaaaccctacgcgaatgtctgcaagatgtttatgatcttcccgca
ctggaacgtttgatgcgtcgcctgaacggtggcgaaattcaaatatccgatgtaacgact
actacgccctcgcctttcgccacaagtttattgttcggctatgtcgcggaatttatgtac
cagagcgacgccccgctggcagagcgccgggcatccgtactgtcgctggacagcgagtta
ctgcgcaatctactcggacaggtcgatccgggggaattactcgacccgcaggtcattcgc
caggtggaagaagagttgcaacgactggctcctggcagaagagcgaaaggtgaagaagga
ttgttcgacctgctgcgcgaactggggccaatgaccgttgaagacctggcgcaacggcat
acaggcagcagtgaagagattgcgtcgtatctggaaaatcttcttacagtaaaacgaatc
ttcccggcgatgattagcggacaggagcgtcttgcctgtatggatgatgccgccaggctg
cgcgatgccctcggcgtacaactaccagagtctctgccagagatttatttgcatagagtc
agttacccgcttcgcgacctctttctgcgctatctccgggctcatgctctggtcacggct
gaacaactggctcatgagtttagtctcggtattgccattgtcgaagagcagcttcagcaa
ctgcgcgaacagggtctggtgatgaatctgcaacaagacatctgggtgagcgatgaagta
tttcgtcgtctgcgtttgcgctcgctgcaagccgccagagaagcgacgcgtcccgttgca
gccacgacctatgcgcgattgctgctggaacgtcagggcgtattacccgccaccgatggt
agcccggcgctctttgcctcaacatcgccaggcgtttatgagggcgtagatggcgtgatg
cgggtaatcgaacagcttgccggagtcggcttacccgcctcactctgggaaagccagatc
ctgcctgcccgcgtacgcgactattcgccagaaatgctcgatgaattactggcaaccggt
gcggttatctggtcggggcaaaaaaaactgggtgaagatgacggcctggtggcactgcat
ctacaggaatatgctgcagaatcgttcactcccgccgaagcggatcaggcgaatcgttcg
gcgctgcaacaagcgatagtcgctgttctggctgacggaggagcctggtttgcacaacaa
atcagccaacggatacgcgacaaaatcggcgaatcggttgatccctcggcactgcaagag
gcgttatgggcgctggtctggcaaggcgtcatcaccagcgatatttgggcaccgttacgc
gccctcacccgcagcagttccaacgcacgcacctcaactcgccgcagtcaccgggctcgt
cgtgggcgtcctgtctatgcacaacccgtctcgccgcgggtatcttacaacacaccaaat
ctggctggacgctggtcgttattgcaggtggagccactaaacgataccgaaaggatgctg
gcgctggcggaaaatatgctcgaccgctacggcatcatcagtcgtcaggcggtgatagcc
gaaaatatccctggcgggtttccatcgatgcaaacgctttgtcgaagtatggaagactcc
gggcgaattatgcgaggtcgttttgtagaaggtctggggggtgcgcaattcgctgaacgt
ctgactattgaccgcttgcgcgatctggcgacacaagccgcgcaaacgcgccactataca
ccagtggcgctctccgccaacgatccggctaatgtgtggggaaatcttctgccctggcct
acacatccggcaacgctggtaccaacgcgtcgggcgggtgcgctggtggtcgtttctggc
ggcaaattgttactctatctggcgcaaggtggcaaaaaaatgctggtctggcaggaaaaa
gaggaattactcgccccagaggttttccacgcgctgactaccgcactgcgtcgcgaacca
cggctgcgctttacgctaacagaagtgaatgatctaccggtccggcaaacgccgatgttt
acgctgctgcgtgaagcgggattttcaagttcgccacaagggctggattggggatag

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