Escherichia coli O18 K1 PMV-1 (ExPEC): ECOPMV1_01561
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Entry
ECOPMV1_01561 CDS
T02847
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecoi
Escherichia coli O18:K1 PMV-1 (ExPEC)
Brite
KEGG Orthology (KO) [BR:
ecoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecoi03019
]
ECOPMV1_01561
Enzymes [BR:
ecoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECOPMV1_01561
Messenger RNA biogenesis [BR:
ecoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECOPMV1_01561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CDH65008
LinkDB
All DBs
Position
1568568..1572470
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDHAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPADYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKTRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNFAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWSGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGFSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEVRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttactgccttgcagcagcggctggattcgctgatg
ctgcgtgacagactgcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccatgcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggagattacttacccggacaatttgccggttagt
cagaaaaaacaggacattctcgaagcgattcgtgaccaccaggtggtgatcgtcgccggg
gaaacgggttccggtaaaacgactcagctaccgaaaatctgtatggagctgggtcgcggg
attaaagggctgatcggccatacccagccgcgtcggctggcggcgcgaacggtggcgaac
cgtattgcggaagagctaaaaacggagccgggcggttgcatcggttacaaagtgcgtttc
agcgatcacgtcagtgataacacgatggtcaagctgatgaccgacggtatcctgctggca
gagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcgcac
gaacgcagcctgaatatcgattttctcctcggctatttgaaagagttgctgccgcggcgt
cctgacctaaaaattattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagctgatgacaccgagcgcgaccagttgcaggcgattttcgat
gccgtagatgaactgagccaggaaagccctggcgacattctgatttttatgagcggcgag
cgagaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccatacggaaatt
cttccgctttatgcacggctttcgaacagcgagcagaaccgcgtcttccagtcgcacagc
ggacggcgcattgtgctggcgactaacgtcgcggaaacctcgctgaccgtaccggggatt
aaatacgttatcgacccaggtacggcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgagccaatttcgcaggcttcagctaatcagcgtaaaggccgctgc
ggtcgtgtgtcagaagggatctgtattcgtctctattccgaagacgatttcctctcgcgc
ccggagtttaccgacccagaaattctgcgtactaacctggcctcggttattttgcagatg
accgcactgggcttgggcgatatcgccgcattcccgtttgtcgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgaccca
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacttccgcgctctctattcaggacccgcgtgagcggccaatggacaagcagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctcgcgtttgtgaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttcaaacgccttccgtcgcctg
tgccgtactgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacccag
ttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggattatcgc
gaaattcacattgcgttgctgaccggtttgctttcgcatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttccggctta
ttcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
ggacgcattgctgcgcggatcgacccggaatgggtggagccagttgctcagcatttgatt
aaacgcacctatagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactggcag
acgcgtcacgcattcttccgtgaaaacctgaaactacgggccgaagtggaagaactggaa
cacaaaactcgtcgccgcgatattctggtggatgacgaaacgttgtttgagttctacgac
cagcgcatcagccacgatgtgatctccgcacgccatttcgacagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaaaatcagcaaactggattacccgaacttctggcatcagggcaatctcaaactgcgt
ttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtgcatatcccgctg
ccgctacttaaccaggttgaggagagtgggtttgagtggcagatccccggtctgcgtcgt
gagctgatcatcgccctgattaaatcgctgccgaagccggtacgccgtaattttgtgccc
gcgccaaacttcgccgaagcgtttttaggccgcgtcacaccgctggaattgccgttgctc
gacagccttgaacgagagttacggcggatgactggcgtcaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaatcactttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcattacaggatctgaaagacgccctgaaaggcaaagtg
caggaaacgctgtctgccgtggcggatgacggtatcgagcagagcggtttacatatctgg
agttttggtcaactgccggaaagctacgagcagaagcgcggcaactacaaagtgaaggct
tggccggcgctggtggatgagcgtgacagcgtagcgatcaaactgtttgataacccgctg
gaacagaagcaggcaatgtggagcggtcttcgccgtttactgctgctaaatattccatcg
ccgatcaagtacttgcacgaaaagctgccaaacaaagccaagctggggctgtactttaac
ccgtatggcaaagtgctggagctgatcgatgactgtatctcatgcggtgtggataaatta
atcgacgccaacggcggtccggtctggacggaagaaggctttgctgcgctgcatgaaaaa
gtccgcgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctc
actgcggtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcgctg
gggttttctgacattaaagcgcagatgggcgggctggtgtatcgcggttttgtcactggt
aacggcttcaaacggctgggcgacacgctgcgttatttgcaggcgattgaaaaacgactg
gaaaaactggcgattgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaacgtc
cagcaggcgtggcagcaatggatcaacaaactaccgcctgcacgtcgtgaggatgaagac
gtgaaagaggtccgctggatgatagaagagctgcgcgttagttacttcgctcaacaactt
ggcacgccttatccgatttcggataagcgtattttgcaggcgatggagcagattagcggt
taa
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