Escherichia coli O152 H28 SE11 (commensal): ECSE_0148
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Entry
ECSE_0148 CDS
T00784
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ecy
Escherichia coli O152:H28 SE11 (commensal)
Brite
KEGG Orthology (KO) [BR:
ecy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecy03019
]
ECSE_0148
Enzymes [BR:
ecy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECSE_0148
Messenger RNA biogenesis [BR:
ecy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECSE_0148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_22
HA2_N
Motif
Other DBs
NCBI-ProteinID:
BAG75672
UniProt:
A0A979H0G0
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Position
163424..165898
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AA seq
824 aa
AA seq
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MLQCGAKNVNPLERFVSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP
GINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLT
RMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQ
QMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEI
QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR
LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERAA
AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRLLQMLGALEGERLS
AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW
QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDA
LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW
RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP
EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA
HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT
RDLSAFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgctacaatgtggcgcgaagaatgttaaccctctggagcgttttgtgtcgtcgttgccc
gttgctgccgtcttacctgaattacttaccgctctcgattgtgcgccgcaggtattatta
agtgcgccgaccggggccgggaaatcaacctggctgccgctgcaactgctggcgcatccc
ggcattaacgggaaaattatcctgctggagccgcgtcgtctggcggcgcgtaacgtcgcg
caacggctggcggagctgcttaacgaaaagccaggcgataccgttggctaccggatgcgt
gcgcaaaactgcgtcgggccgaatacccgcctggaagtggttaccgaaggcgtgctgacg
cgcatgatccagcgtgacccggaactgagcggtgttggactggtgatccttgatgaattt
catgagcgcagcttgcaggcggatttggcgttggcgctgttactcgatgtgcaacaaggt
ctgcgtgatgaccttaaactgctgattatgtcggctaccctggacaacgaccgcttgcag
caaatgctgccagaagcgcctgtcgtcatctcagaagggcgctcgtttccggttgaacgc
cgttatttaccgctgcccgcgcatcagcgttttgacgatgccgttgcggtagccaccgct
gaaatgctgcgtcaggaaagcggatcattactgttatttttacctggcgtcggagaaatt
cagcgtgtgcaggaacaactggcttcgcgcatcggcagtgatgtattgctctgcccgctg
tatggcgcgttgtcgctgaacgatcagcgaaaagcgatcctcccggcaccgcaagggatg
cgcaaagtggtgctggcgaccaatattgctgaaaccagtttaaccattgaaggtattcgt
ctggtggtggattgtgcccaggagcgtgtggcgcgttttgatccgcgcacggggcttacg
cgactgattactcaacgcgttagccaggcatccatgacgcagcgtgccgggcgcgccggg
cgtctggagccgggtatctgcctgcatttaatcgccaaggaacaagcagaacgcgctgcc
gcgcaaagtgaaccggaaatcttacaaagcgatctttccggtttgctgatggaattactg
caatggggatgcagcgatccggcgcagatgagctggctggatcaaccgccaacggtgaat
ctactggccgcgaaacgcctgttacaaatgctgggggcgctggagggtgaacgacttagt
gcgcaggggcaaaaaatggcagcgctgggtaacgatccgcgtttagcggcaatgctggtt
agcgcgaagaacgacgacgaagctgctaccgcggcaaaaattgccgccattctcgaagag
ccgccacggatgggcaatagtgacctgggcgtggcgttttcgcgcaatcaaccagcctgg
cagcaacgtagtcagcaactgttaaaacgcttaaacgtacgtggcggtgaggcagacagt
tcgcttatcgcgccgctacttgccggggcgtttgccgatcgcattgctcgtcgccgtggg
caagatggacgctatcaactggcaaacggcatgggagcgatgctcgatgccaacgacgcg
ctaagccgccacgaatggttgatcgcaccgttattattgcagggcagcgcctcgccggat
gcgcggattttactggcgctgctggtcgatattgatgagttagtacaacgctgcccgcag
ctggtacagcagtctgacactgtggagtgggatgacgcgcaaggtacgctgaaagcctgg
cgtcggctacaaatcggtcagttgacggtgaaagtgcagccgctggcgaaaccgtcagaa
gacgagttgcatcaggcgatgcttaatggcatccgtgataaaggtttaagcgtgctcaac
tggacggcggaagcggaacagctacgcttgcgtttgttatgcgccgcaaagtggttgccg
gaatatgactggccagcggttgatgatgaaagtttattggcagcgctggaaacgtggctg
ctgccacatatgactggcgtacattcactacgcggcctgaaatcactcgacatttatcag
gcactacgcggattacttgattggggaatgcagcaacgtctggatagtgaattgcctgcg
cattacactgtgccgacgggaagccggatcgccattcgttatcatgaagataacccgccc
gcgctggcggtgagaatgcaagagatgtttggcgaggccaccaatccgacgatcgcccag
gggcgcgtgccgctggtgctggagttgctttcacctgcccaaaggccattacaaatcaca
cgagatttgagcgccttctggaaaggagcgtaccgtgaggtgcaaaaagagatgaaaggg
cgttatcccaaacatgtctggccggacgacccggcaaatactgcaccgacgcgacggacg
aaaaagtattcgtaa
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