KEGG   Erythrobacter flavus: CHH26_13895Help
Entry
CHH26_13895       CDS       T04986                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
efv  Erythrobacter flavus
Pathway
efv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:efv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CHH26_13895 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:efv03400]
    CHH26_13895 (ligD)
Enzymes [BR:efv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CHH26_13895 (ligD)
DNA repair and recombination proteins [BR:efv03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CHH26_13895 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ASP31200
UniProt: A0A222EX31
LinkDB All DBs
Position
complement(2808197..2810719)
Genome map
AA seq 840 aa AA seqDB search
MAAQKDPLADYNAKRDFALTPEPAGKSASNTKGNRFIVQKHDATRLHWDLRLEVDGVLKS
WAVTKGPSPDPDIKRLAVRTEDHPLSYAEFEGVIPKGEYGGGTVMLWDRGTWQPIAGKSV
ADLEEGHLHFCLAGERMRGEWLLVRLKPRKGEKRENWLLRKLQDEHVETGDALVERELTS
VLTGRSMAEIAADKQGKYSLEGQQGGAFVKQMRRASTRNGRQRDKAKSTRKAAALPAYRK
PQLATLVDQVPTGNRWMHEIKFDGYRALIAAKGDEVHVYTRNGKDWTDKFGPLVDAIADC
DLPSCLIDCEIVAYDAKGNPDFSSLQQVLKRGKGAQGPSDRLALHAFDLLELDGENLTGL
PNIERKERLEALLDTAQPPIHVAEHVLGAGERLYRTMCDAGQEGIISKTVDGTYAGRRSK
AWVKVKCTRRQEFVIIGWKKSTAKGRPFASLLMAQNEGDQLVYKGNVGTGFTADDLDELA
GKMKRLARKTPPADVDRASSRGVSWVTPKLVAEIAFAEFTADGNIRHGSFLGLRTDKDAD
HVVPEKPAPQRPADSSVEISSRDRVVFPDSGQTKGELADYYEAVAPIMLPFAARRPVSLV
RCPQGRARKCFFQKHDSGGFGDSVHHVAIREKDGGHEDYLFVDGMRGLLQCVQMGTIEFH
GWVARSDAVETPERMVFDLDPDEGLGFEDVKRAARDIRDQLADLGLASFAMLTGGKGVHV
VVPLTPGHDWDAHKDFARRFAEALSMAQPERFTATMSKAKRRGKIFIDWLRNQRGATAVL
PYSARARSGAPVAVPLAWNELKNMDNAHSYSINDAKTLLDRAQSRSLHGWGFADQRLPDL
NT seq 2523 nt NT seq  +upstreamnt  +downstreamnt
gtggcagcgcaaaaggacccgctggcagactacaacgcgaaacgcgatttcgcgctcacg
cccgaaccggctgggaagagcgccagcaacacgaagggcaatcgcttcatcgttcagaag
cacgatgcgacccgtctgcactgggatctacggctggaagtggatggcgtgctgaagagc
tgggcggtgacgaagggcccttcacccgatcccgatatcaagcggctggcggtgcgcacg
gaagaccacccgctgtcctatgccgaatttgaaggcgtcatacccaagggcgaatatggc
ggcggcaccgtgatgctatgggaccgcggaacgtggcagccgatcgcgggcaaaagcgtt
gccgatctcgaagagggccatcttcatttctgcctcgcgggcgaacgcatgcgcggcgaa
tggctgctggtgcgcttgaaaccgcgcaagggcgaaaagcgcgagaactggctgttgcgc
aaattgcaggacgagcacgtcgaaacaggcgatgcgctggtcgagcgcgagctcaccagc
gttctgaccgggcggtcgatggcagaaatcgcggcggacaagcagggcaaatattcactg
gagggccagcaaggtggcgccttcgtcaagcaaatgcgcagggcatcgacgcgcaatggg
cgccagcgcgacaaagccaaatccacgcgcaaggcggcggcgttgcccgcctatcgcaaa
ccgcaactggcaacgctggtcgaccaagtgccgacgggcaaccgctggatgcacgaaatc
aagttcgatggctatcgcgcactgatcgcggccaagggcgatgaagtgcatgtctatacc
cgaaacggcaaggactggaccgacaagttcgggccgctggtcgatgccattgcggattgc
gatctgccctcatgcctgatcgactgcgaaatcgtcgcctatgatgccaagggcaatccc
gatttctcgtcgctgcagcaagtcctcaaacgcgggaagggggcacagggcccgtcggat
cgcttggcgctccatgccttcgacctcttggaactcgacggggaaaacctgaccggcctg
cccaacatcgagcgcaaggagcggctcgaggcgctgctcgacacggcccagccgcccatt
cacgtcgctgaacacgtgctgggcgcgggcgaaaggctttatcgcacgatgtgcgacgcc
ggccaggaagggatcatcagcaagaccgtcgacgggacctatgcggggcggcgcagcaag
gcgtgggtcaaggtgaaatgcactcgccggcaggaattcgtgatcatcggctggaagaaa
tccactgcgaaagggcgcccctttgcctcgctgctgatggcgcagaacgagggcgaccag
ctggtctacaagggcaatgtcggcacgggcttcaccgcagacgatctcgacgaacttgcc
ggaaagatgaagcggctggcgcgcaagactccgccggcggacgtcgatcgcgcttcgtcg
cgtggggtgagctgggtgaccccgaagctggttgctgagatcgcttttgccgagttcacc
gctgacggcaacatccgccacggcagcttccttgggctgcgaacggacaaggatgccgac
cacgtcgtccccgaaaagccagctccacaaaggccggccgacagctcggtcgagatttcg
agccgcgaccgcgtcgtctttcccgatagcggtcagacgaagggcgaactggccgattac
tacgaagccgtcgcgcccatcatgctgcccttcgccgcccgtcgcccggtcagcctggtg
cgctgcccgcaggggcgcgcgcgcaagtgtttcttccagaagcacgatagcggcgggttc
ggcgacagcgtgcaccatgtggcgatccgcgagaaggacggcggacatgaggactatctg
ttcgtcgacggcatgcgcggcctgctgcaatgcgtgcagatggggaccatcgagttccat
ggctgggtcgcgcgttcggatgcggtggaaacgcctgaacgaatggtgttcgatctcgac
ccggacgaggggctaggcttcgaagatgtcaaacgggccgcgcgcgatattcgcgatcag
cttgccgatctcggtctggccagcttcgccatgctgaccggagggaaaggggtgcatgtg
gtggtgccgctgaccccgggtcacgattgggatgcccacaaagatttcgcgcggcgtttt
gccgaagcactcagcatggcgcagcccgaacgcttcactgcgacgatgagcaaggccaag
cgcaggggaaagatattcatcgactggttgcgcaaccagcgtggcgcgaccgccgtgcta
ccttattcggcgcgagcgcgttcgggagcaccggtggccgttccgttggcgtggaacgag
ctgaaaaacatggataatgcgcattcctattcgatcaatgatgccaagacgttgctcgac
cgcgcgcaatcgcgatcgcttcacggatggggatttgccgatcaacgcctccctgacctg
tga

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