Qipengyuania flava: CHH26_13895
Help
Entry
CHH26_13895 CDS
T04986
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
efv
Qipengyuania flava
Pathway
efv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
efv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CHH26_13895 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
efv03400
]
CHH26_13895 (ligD)
Enzymes [BR:
efv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CHH26_13895 (ligD)
DNA repair and recombination proteins [BR:
efv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CHH26_13895 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASP31200
UniProt:
A0A222EX31
LinkDB
All DBs
Position
complement(2808197..2810719)
Genome browser
AA seq
840 aa
AA seq
DB search
MAAQKDPLADYNAKRDFALTPEPAGKSASNTKGNRFIVQKHDATRLHWDLRLEVDGVLKS
WAVTKGPSPDPDIKRLAVRTEDHPLSYAEFEGVIPKGEYGGGTVMLWDRGTWQPIAGKSV
ADLEEGHLHFCLAGERMRGEWLLVRLKPRKGEKRENWLLRKLQDEHVETGDALVERELTS
VLTGRSMAEIAADKQGKYSLEGQQGGAFVKQMRRASTRNGRQRDKAKSTRKAAALPAYRK
PQLATLVDQVPTGNRWMHEIKFDGYRALIAAKGDEVHVYTRNGKDWTDKFGPLVDAIADC
DLPSCLIDCEIVAYDAKGNPDFSSLQQVLKRGKGAQGPSDRLALHAFDLLELDGENLTGL
PNIERKERLEALLDTAQPPIHVAEHVLGAGERLYRTMCDAGQEGIISKTVDGTYAGRRSK
AWVKVKCTRRQEFVIIGWKKSTAKGRPFASLLMAQNEGDQLVYKGNVGTGFTADDLDELA
GKMKRLARKTPPADVDRASSRGVSWVTPKLVAEIAFAEFTADGNIRHGSFLGLRTDKDAD
HVVPEKPAPQRPADSSVEISSRDRVVFPDSGQTKGELADYYEAVAPIMLPFAARRPVSLV
RCPQGRARKCFFQKHDSGGFGDSVHHVAIREKDGGHEDYLFVDGMRGLLQCVQMGTIEFH
GWVARSDAVETPERMVFDLDPDEGLGFEDVKRAARDIRDQLADLGLASFAMLTGGKGVHV
VVPLTPGHDWDAHKDFARRFAEALSMAQPERFTATMSKAKRRGKIFIDWLRNQRGATAVL
PYSARARSGAPVAVPLAWNELKNMDNAHSYSINDAKTLLDRAQSRSLHGWGFADQRLPDL
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcgcaaaaggacccgctggcagactacaacgcgaaacgcgatttcgcgctcacg
cccgaaccggctgggaagagcgccagcaacacgaagggcaatcgcttcatcgttcagaag
cacgatgcgacccgtctgcactgggatctacggctggaagtggatggcgtgctgaagagc
tgggcggtgacgaagggcccttcacccgatcccgatatcaagcggctggcggtgcgcacg
gaagaccacccgctgtcctatgccgaatttgaaggcgtcatacccaagggcgaatatggc
ggcggcaccgtgatgctatgggaccgcggaacgtggcagccgatcgcgggcaaaagcgtt
gccgatctcgaagagggccatcttcatttctgcctcgcgggcgaacgcatgcgcggcgaa
tggctgctggtgcgcttgaaaccgcgcaagggcgaaaagcgcgagaactggctgttgcgc
aaattgcaggacgagcacgtcgaaacaggcgatgcgctggtcgagcgcgagctcaccagc
gttctgaccgggcggtcgatggcagaaatcgcggcggacaagcagggcaaatattcactg
gagggccagcaaggtggcgccttcgtcaagcaaatgcgcagggcatcgacgcgcaatggg
cgccagcgcgacaaagccaaatccacgcgcaaggcggcggcgttgcccgcctatcgcaaa
ccgcaactggcaacgctggtcgaccaagtgccgacgggcaaccgctggatgcacgaaatc
aagttcgatggctatcgcgcactgatcgcggccaagggcgatgaagtgcatgtctatacc
cgaaacggcaaggactggaccgacaagttcgggccgctggtcgatgccattgcggattgc
gatctgccctcatgcctgatcgactgcgaaatcgtcgcctatgatgccaagggcaatccc
gatttctcgtcgctgcagcaagtcctcaaacgcgggaagggggcacagggcccgtcggat
cgcttggcgctccatgccttcgacctcttggaactcgacggggaaaacctgaccggcctg
cccaacatcgagcgcaaggagcggctcgaggcgctgctcgacacggcccagccgcccatt
cacgtcgctgaacacgtgctgggcgcgggcgaaaggctttatcgcacgatgtgcgacgcc
ggccaggaagggatcatcagcaagaccgtcgacgggacctatgcggggcggcgcagcaag
gcgtgggtcaaggtgaaatgcactcgccggcaggaattcgtgatcatcggctggaagaaa
tccactgcgaaagggcgcccctttgcctcgctgctgatggcgcagaacgagggcgaccag
ctggtctacaagggcaatgtcggcacgggcttcaccgcagacgatctcgacgaacttgcc
ggaaagatgaagcggctggcgcgcaagactccgccggcggacgtcgatcgcgcttcgtcg
cgtggggtgagctgggtgaccccgaagctggttgctgagatcgcttttgccgagttcacc
gctgacggcaacatccgccacggcagcttccttgggctgcgaacggacaaggatgccgac
cacgtcgtccccgaaaagccagctccacaaaggccggccgacagctcggtcgagatttcg
agccgcgaccgcgtcgtctttcccgatagcggtcagacgaagggcgaactggccgattac
tacgaagccgtcgcgcccatcatgctgcccttcgccgcccgtcgcccggtcagcctggtg
cgctgcccgcaggggcgcgcgcgcaagtgtttcttccagaagcacgatagcggcgggttc
ggcgacagcgtgcaccatgtggcgatccgcgagaaggacggcggacatgaggactatctg
ttcgtcgacggcatgcgcggcctgctgcaatgcgtgcagatggggaccatcgagttccat
ggctgggtcgcgcgttcggatgcggtggaaacgcctgaacgaatggtgttcgatctcgac
ccggacgaggggctaggcttcgaagatgtcaaacgggccgcgcgcgatattcgcgatcag
cttgccgatctcggtctggccagcttcgccatgctgaccggagggaaaggggtgcatgtg
gtggtgccgctgaccccgggtcacgattgggatgcccacaaagatttcgcgcggcgtttt
gccgaagcactcagcatggcgcagcccgaacgcttcactgcgacgatgagcaaggccaag
cgcaggggaaagatattcatcgactggttgcgcaaccagcgtggcgcgaccgccgtgcta
ccttattcggcgcgagcgcgttcgggagcaccggtggccgttccgttggcgtggaacgag
ctgaaaaacatggataatgcgcattcctattcgatcaatgatgccaagacgttgctcgac
cgcgcgcaatcgcgatcgcttcacggatggggatttgccgatcaacgcctccctgacctg
tga
DBGET
integrated database retrieval system