KEGG   Sinorhizobium garamanticum: PZN02_001821
Entry
PZN02_001821      CDS       T09001                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
egi  Sinorhizobium garamanticum
Pathway
egi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:egi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PZN02_001821 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:egi03400]
    PZN02_001821 (ligD)
Enzymes [BR:egi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PZN02_001821 (ligD)
DNA repair and recombination proteins [BR:egi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PZN02_001821 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: WEX89261
LinkDB
Position
1:complement(1974283..1976880)
AA seq 865 aa
MAARNEPLSEYNRRRDFRRTSEPKGTVARAHAGRKRFLVQKHDATRLHYDFRLEWEGVLK
SWAVTRGPSLDPEDKRLAVRTEDHPLAYGDFEGTIPEEEYGGGTVMLWDTGWWEPEGDPS
EGLKKGKLSFQLHGKRMSGGWALVRMRPRDDGKRESWLLIKENDKAASEDGESLVEKNLT
SVRTGRTMDEIAEGKGEKRARVWHSNKSTAANLNAGAVAENKDRRKRSTRKSTGKLPAFK
APQLATLVSKAPAGDEWLNEAKFDGYRLMVAIGGGTVRCYTRNGLDWTEKFPAIASALAE
LDCKSALIDGEVVALSEEGSTFSALQKALRTGATTRLYAFDLVELDGKDLSRKPLVERKE
RLKALLDTLDTTSTVQYSEHVEGNGKHVLAAICKAGQEGIIAKEANAPYRSGRTRSWLKV
KCTKRQEFVIGGYSPSTKKGRAFASILLGTFEGDKLVYRGGVGTGFAQKTLEELAAAFAK
RKRKTSPFDSVPRERERDAVWLTPDLVAEVDFTELTHDGYVRHGSFEGLREDKEAKAVKL
ETPKPTDAAAETGKGKRATRPRTVAPAKGDADVLGIRISHPDRVLFAGQGVTKIDLARYY
AVVADRMLPFAADHPVSLVRCPQGGQRQCFYQRHASDGFPQEIREVAIKEVSGETEKYMY
VRDAKGLVASVQMGTLEFHIWGATIDKLETPDRLVFDLDPDPSVDFATVKRAAVALRDEL
SDAGLTSVPMVTGGKGVHVIVPLVRRASWDEAKGFAKKMAQRFADRDPDRFIATMSKAKR
KGRIFIDWLRNERGATAICPYSTRAREGGPIATPVDWDELAELEAANSFRIADVLARIEA
GTDPWRDAGETRQTLTKKILSSVAD
NT seq 2598 nt   +upstreamnt  +downstreamnt
atggctgctcgcaatgaacccctttccgaatacaaccggcgccgcgactttaggaggaca
agcgagcccaaaggaactgtcgcccgggcacacgctggcaggaaacgctttctggttcag
aaacacgatgccacccgcctgcactacgacttccggctcgaatgggagggagtgctgaaa
agctgggccgtaacacgcggcccgagtctcgatccggaagacaagcgccttgcagtgcgc
accgaagaccatcccttagcctatggcgacttcgaaggcacgataccggaagaagagtac
ggcggcggcacggtgatgctctgggacaccggctggtgggagcccgaaggcgacccatcc
gaaggcctgaagaagggcaagctctcgtttcaattgcacggtaagcggatgagcggcggc
tgggcgcttgtgcgcatgcggccgcgagacgatgggaagcgtgaaagctggctgctgatc
aaggaaaacgacaaagccgcctcagaggacggtgagagcctcgtcgaaaagaacctgacg
agtgtccgcaccggccgcaccatggatgaaattgctgagggcaagggcgaaaaacgggca
cgcgtctggcattcgaacaagagcacggcggccaatctcaacgccggcgcagttgccgag
aacaaagatcgacgcaagcgctcaacgcgaaaatccaccggaaagctgcccgccttcaag
gcaccgcagcttgcgaccctggttagcaaggcacccgccggagacgaatggttgaacgaa
gccaagttcgacggctaccgcttgatggtcgctatcggcggcggcaccgtccgttgctac
acgcgcaacggtctcgattggaccgagaagtttccggctattgcctccgctcttgccgag
ctcgattgcaagtccgcgctgatcgatggtgaggtggtggcgctgtcggaggaaggctcg
actttttcggccctgcagaaggcactgaggaccggcgccaccacacggctctacgccttc
gatctcgtcgaactcgacggcaaggacctgagccgcaagccgcttgtcgagcgaaaggag
cggctgaaggctttgctcgacacgctcgacaccacctcgaccgttcagtacagcgagcac
gttgaaggcaacggcaaacatgtgctggccgccatatgcaaggccggacaggaaggtatt
atcgcgaaggaggcgaatgctccctatcgcagcggacgcacgcgaagctggctgaaggtc
aaatgcacaaaacgccaggagttcgtcatcggcggctatagcccgtcgacgaaaaaaggg
cgcgccttcgcgtcaatccttctcggcacattcgagggtgataagctggtttaccggggc
ggtgtcggcaccggcttcgcgcaaaagaccctggaagagctcgcggccgccttcgcaaag
cgcaagcgcaagacgtctccgttcgacagcgtgccaagggaaagggagcgggatgccgtc
tggctgacgcccgatcttgtggcagaggtggatttcaccgagcttacccatgacggatat
gtccgccatggctcattcgagggattgcgcgaggacaaggaggccaaggccgtgaaactg
gaaacaccgaagccgacggacgccgcagcggagaccgggaagggcaaacgcgcgaccagg
ccccgcacagtggcgcccgccaagggcgatgccgatgtcctcgggattcgcatctcgcat
ccggaccgcgttctctttgccggccagggcgtcaccaagatcgaccttgcccgctattac
gccgtcgttgcggacagaatgctgcctttcgcggccgaccatcctgtttcgctggtgcgt
tgcccgcaaggcggacagcggcagtgtttctaccagaggcatgccagcgacggctttccg
caggagattcgcgaagtcgcgatcaaggaggtctcgggcgaaaccgagaaatatatgtac
gttcgcgacgccaaaggcctcgttgcctcggtgcagatggggacgctggaatttcacatc
tggggcgccacgatcgacaagctggaaacgcccgaccgtctggtcttcgatctcgatccc
gatccaagcgtcgacttcgccacggtgaagcgcgcggcggtagcgctgcgcgacgaacta
tcagatgccggcctgacatccgttcccatggtgaccggcggcaagggcgtccatgtcatc
gtgccgctggttcgacgcgcgtcttgggacgaggctaagggtttcgccaagaaaatggcg
cagcgtttcgcggatcgggatccggatcgtttcatcgccaccatgtccaaggccaagcgc
aagggccggatcttcatcgactggctcagaaacgagcggggcgccacggccatttgcccc
tactccacccgcgcccgcgagggcgggcccattgcgacaccggtcgactgggacgagctc
gccgagcttgaggccgccaacagcttccgcatcgccgatgttctcgcgcggatcgaagcc
ggaacagacccttggcgcgacgccggtgagaccaggcagacgctgacgaaaaagatactg
agctcggtcgccgactga

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