Sinorhizobium garamanticum: PZN02_002261
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Entry
PZN02_002261 CDS
T09001
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
egi
Sinorhizobium garamanticum
Pathway
egi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PZN02_002261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egi03019
]
PZN02_002261
Enzymes [BR:
egi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PZN02_002261
Messenger RNA biogenesis [BR:
egi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PZN02_002261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
UTP25
Motif
Other DBs
NCBI-ProteinID:
WEX86009
LinkDB
All DBs
Position
1:complement(2427838..2429349)
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AA seq
503 aa
AA seq
DB search
MSTFKELGLSEHILVTLSANGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPM
IEKLVADGKRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLVARKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVAVTPPGKAADKVEQYVHFVPGKDLKTVILKQT
LTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGINIAVASGETPADQARPSKGRGGRGNGQRHGNGGGHRQEGRPHRERPAREPAAA
PSSFAGDDLLRDERHPQKHDRRDQRQPAHGHHDGRSEGNRNHEGRKHHGRPASKHEGRNH
RDGQSGNRQESGRGTRRSNNGVR
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgtccacttttaaagagctcggtctttccgagcatattctggtgacactctccgccaat
ggtttcgaaaagccgacgccgatccaggcgcaggccattccgctggtcttgaaaggccat
gatctcatcggcctcgcacagacaggcaccggcaagaccgctgcattcggcctgccgatg
atcgagaagctcgtcgccgacggcaagcgcccggatccgcgcaacatccgcgctctcgtg
cttgcccccacccgcgaactggtgaaccagatcgcagccaacctgaagcttttcgtgaag
aagagcccgcttaagatcggcgtcgtcgtcggtggcgtctcgataaacaagcagaccgaa
cagctcgcccgcggcgtcgacattctggtcgcgacccctggccgtctcctcgatctcgtt
gcccgcaaggcggtgacattgacgcaggctcgctatctcgtcctcgacgaggccgaccag
atgcttgacctcggcttcatccacgacctgcgcaagatctcgaagctggtgccgaagaac
cgccagacgctgctcttctccgcgaccatgccgaagctgatcgccgagcttgccggcgag
tacctgaccgatccggtcaaggtcgctgtcacgcctccgggcaaggccgccgacaaggtg
gagcaatatgtccatttcgttcccggcaaggatctgaagacggtaatcctgaagcagacg
ctgaccgccaatcccgatggcctgtcgctgatcttcagccgcaccaagcatggcgccgag
aagctgatgaagcatctggaccatgtcggcttcaaggccgcctcaatccatggcaacaag
agccagggtcagcgcgagcgcgccttgaaggccttccgcgacggtgaaatccgggtgctc
gtcgcgaccgatgtcgccgcccgcggtatcgacattccaggcgtgacccatgtctacaac
tacgacctgccggaagttccggacgcctacgtccaccgcatcggccgcacggcccgcaac
ggccgcgacggcatcgccatcgccttctgtgcaccggacgaaatccgccttctgcgcgac
atcgagaagttgatgggcatcaacattgccgtcgctagcggcgagacccctgccgaccag
gcgcgtccgtcgaagggacgcggcggtcgcggcaatggccagcgtcacggcaacggtggc
ggtcaccggcaggaagggcgcccgcatcgcgagcgtccggcgcgcgaaccggcggcagct
ccgtcgagctttgccggcgacgatctgctgcgcgacgaacggcatccgcaaaagcacgac
cgccgcgatcagcgccagccggctcacggccatcatgacggccggtcggaaggcaaccgc
aaccacgaaggtcgcaagcaccacggccgtccggcatcgaaacacgaaggccgaaaccac
cgtgacgggcagtccggcaaccgccaggaaagcggccggggaacccgtcgcagcaacaat
ggtgttcgctag
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