Eucalyptus grandis (rose gum): 104419345
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Entry
104419345 CDS
T03547
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104419345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104419345
Enzymes [BR:
egr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
104419345
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104419345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
SRPRB
AAA_22
ATP_bind_1
FtsK_SpoIIIE
ABC_tran
DUF1611
AAA_29
Motif
Other DBs
NCBI-GeneID:
104419345
NCBI-ProteinID:
XP_010029285
UniProt:
A0A059ARW1
LinkDB
All DBs
Position
9:32464871..32470153
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AA seq
436 aa
AA seq
DB search
MAYGGAPGGAGSASATKQVKLEKESELRVEVGPETPLRVRLVSGTAEIFGTEMPPEIWLS
FPPRHKFAVFTWYGATVELDGDTETDYTADETPMVSYVNVHAILDARRSRAKASASDSEA
SQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGSISATPIELP
IDPVEGVPLEMPLVYFFGHVTPSNNVELYKVLVKELALTLERQFSGNAESTAAGMVINTM
GWIDGVGYELLQHAIDTFKANVVLVLGQEKLFSMLKKDVLKVNPNVDVVKLQRSGGVVSR
NQKYRQKFRSLRMREYFYGLTNDLSPHANIANFSDLIIYRIGGGPQAPHSALPIGAKPVA
DPLRLAPVNINRDLLHVVLAVSFAAEPDQIVSSNVAGFIYVTDVDIQRKKVTYLAPSPGD
LPGKFLVMGTLTWLET
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacggaggcgcgcccgggggggcgggctccgcgtcggcgacgaagcaggtgaag
ctggagaaggagagcgagctgcgggtcgaggtcggccccgagacgccgctccgcgtccgg
ctcgtctccggcaccgccgagatcttcggcaccgagatgccgccggaaatctggctctcc
ttccctccccgccacaagttcgccgttttcacttggtacggggctactgttgagttggat
ggcgataccgaaactgattataccgccgatgagacaccgatggtcagctatgtgaacgtg
cacgccatacttgatgcgcgaagaagccgtgctaaagcttcagcatcagattctgaagcc
tctcagggtcctagagtcatagtcgtgggacctacagattctggaaagagtacgttatca
aggatgcttcttagctgggcagccaaacagggctggaaacctacttttgttgacttggat
attggtcaaggatctatcactatccctggtagcatttcggctaccccaattgagttgcct
attgatccagttgaaggggttcctcttgagatgcccctagtttacttcttcgggcatgta
actcctagcaacaatgtagaattgtacaaagtgcttgtgaaggagcttgctcttactctt
gagagacagttctcaggaaatgctgaatctacagctgcgggcatggtgattaatacaatg
ggatggatagatggtgtaggctatgagttgcttcaacatgcaattgatacattcaaagca
aatgtagtgttggttttgggtcaggagaaacttttcagcatgcttaagaaagatgtactt
aaggtcaaccctaatgtggacgttgttaaacttcaaaggtcaggtggtgttgtatccagg
aatcaaaaatatcgtcagaagtttcggagccttaggatgagggagtatttctacggcctg
acaaatgatctatctccacacgcaaatatagcaaatttcagtgatttgatcatttatcga
attggtggtggtccacaagctccgcattctgctttacctattggtgcaaagcctgttgct
gaccctctcagactagcccctgtgaatatcaacagggatctactccatgtggttcttgct
gtttcatttgctgcagaaccggatcagattgtttcaagtaacgttgctggatttatctac
gtgacagatgtcgacatacaaaggaagaaagtcacataccttgcgccatcaccgggggat
ctcccaggcaaatttcttgtaatgggaaccttgacatggcttgagacatga
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