Eucalyptus grandis (rose gum): 104425470
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Entry
104425470 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104425470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
104425470
Enzymes [BR:
egr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104425470
Transcription machinery [BR:
egr03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
104425470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Perm-CXXC
CDC27
Motif
Other DBs
NCBI-GeneID:
104425470
NCBI-ProteinID:
XP_039160179
LinkDB
All DBs
Position
11:22976057..22996158
Genome browser
AA seq
1683 aa
AA seq
DB search
MATAEGVSEFVESVRFGFLTDEEVRKQSCVKVTNTVLLDNVERPVAAGLYDPAMGTLNDT
TACKSCGQRSFNCPGHCGHIDLVSPVYNPLXFNTLYNLLKRTCFFCFHFRESRSQVIRRC
MFSKLELIAKGNVAGAKELDSKWATNSSLREASNGGDVSCSTVRSDSQHDSPVNQKQGEW
TSLQFNEAMSVLNKFLKPTYKECKNCKAKNPKISKPTFGWFHMSGMTGAQTRGNIIRGNK
MDGPFLDGDGEMESLEGAFLQDDGGNEAETQSSTFASPDSIGIAKKGQKKRKGQSLSDEY
IKQKNFFSGPLLPSEVKEIMKLLWENEAPLCSFISDIQQQGSGNSATHSMFFLGTVLVPP
IKFRPPSKGGDSVMEHPHTVLLAKVLQANISLGNAHQSNRATIISRWMDLQQSINLLFDS
KTATGQGRRDVASGICQLLEKKEGMFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYF
ALRLTYPERVTPWNTVSLRKAIINGADTHPGATHYIDKLSTLKLPPARKGRISISRRLPS
SRGVVTQAGRSSDNEVEGKIVYRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM
HYANCSTYNADFDGDEMNVHFPQDDISRAEAYNIVNANNQYVKPTNGSPIRALIQDHIVS
AAILTKKDTFLNYDEFNHLLYSSGVSTAGSGSFRKLGKKVAINFEDNLLCPVPAIWKPEP
LWTGKQLIAAVLDHLTRGYPPFTVEKQGKIPSDFFKRKLKHKPSKRKGTNKDKLREQDKI
ERNEEPGEDTVLIFKNYLICGVIDKAQFGDYGLVHTFQELYGSNAAGILLSAFSRLFTAF
LQLHGFTCGVDDLLLSKDIDEKRQQQLEECENCGEEVHCEVVGVNDFIDPAELQLKIEEV
IRSNGDSALTNLDRRMISRLNELSSKKIEKNLLSEGLFKPTGKNCISLMTTSGAKGGTAN
FQQISSHLGQQELEGRRVPRMVSGKTLPCFPPWDWASRAGGFIIDRFLTGLRPQEYYFHC
MAGREGLVDTAVKTSRSGYLQRCLVKNLECLKVSYDHTVRDADGSIVQFYYGEDGIDVHK
TSFVAKFDALLANHDIMKAKYSTELRKSNSYITDLPEALKDKANKFICDRNLSVPRLARN
EILKPEDFVKSVEQKYFSSLAQPGEPVGIVAAQSVGEPSTQMTLNTFHHAGRGEMNVTLG
IPRLQEILMTASTDIKTPIMTCPLWRGRSKQDANSLAEKLKKITVAEMIESMEVAVVPFA
VNNHQVCSIYKLKMKLKRPKVFSVKHCEEILEVVYLRELEDAMQNHLLLLSKISGIKNFT
SDSRPKTSSETDEDASGLASQHAEERTVDDDADDGDDDGNDNDDLGFDGQKRKRQATDEM
EYEDGYEEERNEPELSAGLESDGDQANDVDIGEDGDGPPGIAPEIVSPSKTKKSKKNAKS
DDEGKKRXRTKVIKEFDRAIFVAANGLDFEVHFRFTNEPHVLLAQIAQKVAKKVYLRSSG
KIESCQVITCKENQVIYYGEDPKRRQKIEAKDKEAIPAINTNGADFCALWQMQDQLDIRY
IYSNDIHAMLTTYGVEAARETIIREVQNVFGSYGISVDMRHLTLIADFMTHAGGYRPMNR
LGGIAESISPFSKMSFETASKFIVDAAYHGVVDNLETPSARICLGLPMKMGTGSFDLLQK
IEL
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcagagggggtgtcggagttcgtcgagtcggtgaggttcggtttcctgacg
gacgaggaggtgaggaagcagagctgcgtgaaggtcaccaacacggtcttgctcgacaat
gtggagaggccggtggccgccgggctctatgatccggcgatggggacgctgaacgacaca
acggcttgtaaatcctgtggccagcggtcgttcaattgccccggtcattgcggtcatatc
gacctagtttctccggtctataacccactgnctttcaatacgctctataatcttctgaaa
aggacttgcttcttttgcttccacttccgggaaagtaggagccaggtaattcgtcgatgc
atgttttccaaattggaactcattgcaaaaggcaatgttgctggtgcaaaagaactggat
tccaagtgggctaccaattcttcactgcgagaggctagtaatgggggtgacgtatcatgt
tcgactgtgagatctgattcgcagcatgacagtcctgtgaatcagaagcaaggagaatgg
acctcacttcagttcaatgaagcaatgtcagttttgaataagtttttgaagccaacgtat
aaggagtgtaagaactgcaaagctaaaaatcccaagatcagtaaacctacttttggctgg
ttccacatgagtggcatgactggagctcaaaccagaggaaacattattagagggaacaag
atggatgggccatttcttgatggagatggcgagatggaaagtcttgaaggtgccttcctc
caagatgatggtggaaatgaagctgaaactcaatcgtccacttttgcatctcccgacagt
attggcattgccaaaaaagggcagaaaaaaagaaagggccaaagtttgtctgatgagtat
attaagcagaagaattttttctcaggacctttattaccatcagaggttaaagaaattatg
aaacttttgtgggagaatgaagcaccattatgctcatttatcagtgacatacagcagcag
ggttctgggaatagtgcaactcactctatgtttttcttggggactgttcttgtacctcca
ataaaatttcgtccaccgtctaagggaggtgattcagtgatggaacatccacatacagtt
ctattggcgaaggtattgcaggccaacatctccttagggaatgctcatcagtcaaatcgc
gcaaccatcattagccgatggatggaccttcaacaatcaataaatcttctttttgatagc
aaaactgctacaggtcaaggtcgaagagatgtggcttcaggtatatgtcagttgctggag
aaaaaggaaggcatgttccggcagaatatgatgggcaagagagttaattatgcttgtcga
tctgtcatatctcctgatccttacttagcagttaatgaaatcggtattcccccttatttt
gcattgagattgacatacccagagagagtgactccttggaatactgttagtttgcggaaa
gctattatcaatggcgcagatactcatccaggagcaacacactacattgacaagttatct
actcttaaactaccaccagctagaaaaggtcgaatttcgatctcaaggagattaccttca
tcgagaggggttgtcacacaagctgggaggagttcggataatgaggttgaaggtaaaatc
gtatatcgccacttgagagatggagatatcgttctggtcaatagacagcctacacttcac
aagcctagtataatggcacatgttgttcgtgtattgaagggggagaaaacacttcggatg
cattatgcaaattgcagtacatacaatgctgactttgatggtgatgaaatgaatgtccat
tttccacaagatgatatttcacgtgctgaagcttacaacattgtgaatgcaaacaatcaa
tatgttaaaccaaccaatgggtctcctattagagcattgatccaggatcacatagtcagt
gctgcaattcttacaaagaaggatacatttttgaattacgatgaattcaatcacctcctt
tatagttcaggagtttctacagctggatcaggttctttcaggaaacttgggaaaaaggtg
gcgattaattttgaagacaatttgctctgtcctgtgcctgccatttggaaaccagaacct
ctctggacaggaaaacagttgattgctgcagttctagatcatttaactagaggttacccg
ccatttactgtggaaaagcaggggaagataccatctgacttttttaaaagaaaacttaaa
cataaacccagtaagagaaagggtactaacaaggataaactgagggaacaggacaaaata
gaaagaaatgaagagcctggtgaagatactgtgttgatattcaaaaactacctaatctgt
ggagtcatcgataaggctcaatttggtgactacggtctagttcatacatttcaggagctt
tatggctcaaatgctgcaggaattttgctatctgcatttagtcggttatttacagctttt
cttcagctgcatggtttcacatgtggagtggatgatcttttgctgagtaaagatattgat
gaaaaaagacaacaacaacttgaagaatgtgaaaattgtggagaggaagtacactgcgag
gttgttggggttaatgatttcatagacccagcagaacttcaattgaaaattgaagaagta
atacgcagcaatggagattcagccctcaccaatctagataggaggatgattagtaggcta
aatgagttgagtagtaaaaagattgagaagaatttgctgtctgaagggttattcaagccc
actggaaagaactgcatttcactgatgactacatctggggccaaagggggtactgcgaat
ttccagcaaatatcttctcatttgggtcaacaggagctagaaggcagacgagtccctaga
atggtctctggaaagactttgccctgctttcctccttgggattgggcatctcgggctgga
ggctttataattgatcgatttcttactggtctgcgaccccaagaatattacttccattgt
atggctggccgagaagggttagttgatacagcagtcaaaacatctcgcagtgggtatctg
cagagatgcttggtaaaaaatctcgaatgcctaaaagtttcttatgatcataccgtccga
gatgcagatgggtccatcgtgcaattttattatggagaagatggcattgatgtccataaa
acaagctttgtggcgaaatttgatgccctgttggctaatcatgacattatgaaggcgaag
tattccactgagcttcgcaaatctaatagctatatcacagatttgccagaagctctaaag
gacaaagcaaataaattcatttgtgataggaatctttcagttcctagattagcaaggaat
gagatattaaagccagaagactttgtgaagtcagtggaacaaaaatatttctcaagtctt
gcacagcctggagaaccagttggcatagtagctgctcagtctgttggagaaccatcaaca
cagatgacattgaacactttccatcatgctggtcgaggagaaatgaatgtgacacttgga
attccacgcctacaggaaatattgatgaccgcgtccactgatattaagactccaattatg
acctgccctttatggagagggaggtcaaagcaggatgccaattctcttgctgaaaaatta
aagaaaatcactgtggccgaaatgattgaaagtatggaagttgcggttgtgccatttgca
gtgaataatcaccaggtctgcagcatatataagctgaaaatgaagcttaagaggcctaaa
gtcttttcagtaaaacactgtgaagagatcttagaagttgtataccttagggagttggaa
gatgcaatgcagaatcatcttcttttgctctccaaaatcagtgggataaagaattttaca
tcagattcaagacccaagacatcaagcgagactgatgaagatgcatctggtttggcttca
cagcatgctgaggagaggaccgtagatgacgatgctgatgatggtgatgatgatggcaat
gacaatgatgatcttggttttgatgggcaaaaacgtaaaagacaagctacagatgaaatg
gagtatgaggatggttatgaagaggagcggaatgaaccggagctgtctgctggattagaa
agtgatggtgatcaggctaatgatgttgatattggtgaagatggtgatggaccgcctggg
atagcaccagagattgtgagcccttctaaaacaaagaaaagtaagaaaaatgcaaagtcg
gatgatgaaggaaagaagaggntcagaacaaaagtgatcaaggaatttgacagagcaatt
tttgtggcagcaaatggattggacttcgaggtccatttcagatttactaatgaacctcat
gttttgctggcccagattgctcagaaagtggccaaaaaggtgtacctcaggagctctggc
aagatcgaatcttgtcaagtgattacttgcaaagagaaccaagtgatctactatggggaa
gatcccaaaagaagacagaaaattgaggccaaggataaagaagcaattccggcaattaat
acaaacggagcggatttttgtgcgttgtggcaaatgcaagatcagctggacattagatat
atatattcgaatgatatccacgcgatgctcactacatatggggtggaagctgccagagaa
accatcatacgggaggtgcagaatgtcttcggttcatatggaatatctgtggatatgcgt
cacctcaccttgattgcagacttcatgacccacgcaggtgggtatcgtccaatgaacaga
cttggtggtatagcagagtccatatcacctttcagtaagatgtcctttgagacagcttcc
aagttcattgtcgatgcagcatatcatggggtggttgacaacttggagaccccatccgct
cggatatgcctcgggctacctatgaagatgggtactggttcttttgatttactacagaaa
attgagttatga
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integrated database retrieval system
