Ethanoligenens harbinense: Ethha_2276
Help
Entry
Ethha_2276 CDS
T01384
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eha
Ethanoligenens harbinense
Pathway
eha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ethha_2276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eha03019
]
Ethha_2276
03016 Transfer RNA biogenesis [BR:
eha03016
]
Ethha_2276
Enzymes [BR:
eha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Ethha_2276
Messenger RNA biogenesis [BR:
eha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ethha_2276
Transfer RNA biogenesis [BR:
eha03016
]
Prokaryotic type
tRNA degradation factors
Ethha_2276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ADU27789
UniProt:
E6U4I2
LinkDB
All DBs
Position
complement(2437062..2439161)
Genome browser
AA seq
699 aa
AA seq
DB search
MNMTKTQERVLRFIRADGYRPMQVNELAAALSLPESGRPAFFRLLQQMEREGSLTISKTK
KVHAREAEGKPATIMNMSKRGGFAQLADQSTDVYIDKSRLMGAMPTDEVEVRILRETDRL
PEGEVTRIVKRNFVKFTGTYYREGGRGFVLPDFGFKERIEVLPDDVKTLGEHEKVMAEML
RYPTAADNGQVHVVMSYGSADSGAACCQAVLDRKHARQVFPDEVLAEANAIPQTFDPAGR
FDLRDRIILTIDSAHSKDLDDAISIEKTDGGYRLGVHIADVSHYVRPGTALNEEAFERGT
SIYFGNRVIPMLPEALSNGICSLNPREDRLAFTVFIDVNGSGEIIGHELHKSVIRSYVKG
VYDEINQIYAETAGEDLLAKYKDALPSIARMRELAELLQQARKRRGAIDFESDDCEVVFN
EQGVAVDIVRRTRGISERMIEEFMLLANEAVATFASEKKLPFVYRVHEEPDALKLENFAA
SLAAVGINNRKIKPGLKPGDLAEVLREIEGTPKERALNQMALRTMAKAKYWPECLGHFGL
ALKYYSQFTSPIRRYPDLVIHRILSELLEHKVETEEILHRYESFVAEAAEQSSEREVNAM
QIEWDCDDIYKAEYMLQHVGGTFSGTITGVKSYGFYVELENTVEGLVRVETLKGWFDYDE
KNMQLFCTTNGRRYSIGDAVTVVATRVEVALGQVDFELA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgaccaaaacccaagaacgggtgctgcggtttatccgggccgacggatatcgc
ccgatgcaggtgaatgaactggctgcggcgctttcgcttcccgagagcggacgcccggct
tttttccgccttttgcagcagatggagcgggaaggctcgctgaccatatccaaaaccaaa
aaggtgcacgcccgtgaggcggagggcaaacccgccaccatcatgaatatgtccaagcgc
ggcggttttgcccagcttgccgatcagtccaccgacgtgtatatcgacaaatcccggttg
atgggcgccatgcccaccgatgaggtggaagtgcgtatcctgcgcgagaccgaccgcctg
cccgaaggtgaagtgacgcgcatcgtcaagcgcaacttcgtcaagttcaccggcacgtat
taccgtgagggtgggcgcggcttcgtactgccggatttcgggttcaaggagcgtatcgag
gttctgccggacgacgtgaaaacgctgggcgagcatgaaaaagtgatggccgagatgctc
cgttatcctaccgccgccgacaacgggcaggtgcatgtggtgatgagctacggctctgcc
gacagcggcgcggcctgctgccaggccgtgctggatcgcaagcacgccaggcaggttttc
cccgacgaggtgctggcggaggcaaacgctattccgcagactttcgatcctgccggccgg
tttgatctgcgtgaccgcatcatcctcaccatcgacagcgcacattccaaggacttggac
gacgcgatctccatcgagaagacggacggcggctaccgcttgggcgtgcacattgccgat
gtgtcgcattatgtgcggccgggtacggcgctcaatgaggaagcctttgagcgcggcacg
tccatctatttcggcaaccgcgtcatccccatgctgccggaggccctttccaacggcatc
tgctcgctcaatccccgggaagaccggctggcgtttaccgtgtttatcgacgtgaacggc
agcggcgagataatcgggcacgagctgcacaaaagcgtcatccgctcttatgtcaagggc
gtttacgatgagatcaaccagatttatgccgaaacggcgggcgaagacctgctggcaaaa
tataaagacgcactgccgtccatcgcgcggatgcgcgagctggcggaactgcttcagcag
gcgcgcaagcgccgcggcgccatcgactttgagtcggatgactgcgaggttgtgttcaac
gagcagggtgtggcggtggacatcgtccgccgtacgcgcggcatctccgagcgcatgatc
gaggagttcatgctgctggccaatgaagcggttgctacgtttgccagtgagaaaaagctg
ccgttcgtctaccgcgtgcatgaggagcccgacgcgctcaagctggagaacttcgcggca
tccctggccgcagtgggcatcaacaaccgtaagatcaagccgggcctgaagccgggcgat
ctggcggaggtgctgcgcgagatcgaaggcacgcctaaagagcgtgcgctcaaccagatg
gcgctgcgtacgatggccaaagcgaaatactggccggaatgcctggggcattttgggctg
gcgctcaaatactacagccagtttacttcaccgatccggcgatatcccgatctggtcatc
caccgtatcctgtcggaactgttggagcacaaggtggaaacggaggagattcttcaccgg
tatgaaagctttgtggccgaggcggccgagcagtccagcgagcgcgaagtcaacgccatg
cagatcgaatgggactgcgatgacatttacaaggcggaatatatgctccagcatgtgggc
gggacgttctccggcaccatcacaggcgtaaaatcctacgggttctacgtggaactggaa
aacaccgtggagggcctggtgcgggtggagacgctcaagggctggttcgattacgatgaa
aagaacatgcagcttttctgcaccaccaacggcagacgctattccatcggcgacgcggtg
accgtcgtcgccacgcgggtggaagtcgcgctcggccaggtggatttcgagttggcgtga
DBGET
integrated database retrieval system
