Edwardsiella hoshinae: A9798_14880
Help
Entry
A9798_14880 CDS
T04508
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eho
Edwardsiella hoshinae
Pathway
eho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9798_14880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eho03019
]
A9798_14880
03016 Transfer RNA biogenesis [BR:
eho03016
]
A9798_14880
Enzymes [BR:
eho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A9798_14880
Messenger RNA biogenesis [BR:
eho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9798_14880
Transfer RNA biogenesis [BR:
eho03016
]
Prokaryotic type
tRNA degradation factors
A9798_14880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
HTH_12
S1
Rho_RNA_bind
RNase_II_C_S1
TFIIE_beta
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AOV98112
UniProt:
A0A376DLT5
LinkDB
All DBs
Position
complement(3334743..3337193)
Genome browser
AA seq
816 aa
AA seq
DB search
MSQDPYLEREAEKYASPIPSREFILMHLAKREKPVSREELAQELALTSDDDLEALRRRLR
AMERDGQLIFTRRQCYALPERLDLIKGTVIGHRDGFGFLRAEGQKEDLYLSPEQMKMCMH
GDVILAQVTGSDRRGRKEVRVVRVLEPRAGLIVGRYFTDAGTGFVVPDDGRLSFDILIPA
ESIAGARMGYVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRSHEIPHTWPEQ
VERQVADLSEQVPENAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPNTALDHEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVA
ASGRLSSYKFYEAVMSSHARLTYTKVAHILAGDAELREHYHALVKPLEELHALYKALDHA
REQRGGISFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANISAARFMEKYHEP
ALFRIHDKPSEDHVMALRSVLAELGLSLGGGTQPEPKDYALLMDQVADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALPAYAHFTSPIRRYPDLSLHRGIKYLLAREQGRTERWTPSG
GWHYHMEDMLQLGEHCSMTERRADEATRDVADWLKCDFMQDHVGQIYGGIITSVTGFGFF
VRLDDLFIDGLVHVSTLDNDYYRFDQVGQRLIGESSGQVYRLGDKVEVKVDAVHLDERKI
DFALISTARGVRGAGKTARVKAQQASNGKAKKPSRPTRRGGKMPANFEPDSAFRRGDDAA
SAKKAKGKSKSKKPSAQTRKIAAATKAKRARNKTAG
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccctatctggaacgcgaggccgaaaaatacgcctctccgatccccagt
cgtgaatttattctgatgcatctggccaagcgcgagaagccggtcagtcgagaggagctg
gcgcaggagttagcgctgaccagcgacgatgatctggaggcgctgcgccgtcgtctgcgc
gctatggagcgcgacggacagctgatttttacccgtcgccagtgttatgccttaccggag
cgcctcgatctgatcaagggtacggtgatcggccaccgtgatggctttggttttctgcgc
gctgaagggcagaaagaggatctctacctgtcgccggaacagatgaaaatgtgtatgcac
ggcgacgttatcctggctcaagtgaccggtagcgatcgccgcggccgcaaggaggtgcgt
gtcgttcgtgtgctggagccgcgtgccggtttgatcgtcggacgttactttaccgatgcc
ggtaccgggtttgtggtgccagatgatggccgtctaagcttcgacatcttgattccggcg
gagtcgatcgccggtgcccgtatgggctacgtggtggtagtcgagttaacacagcgcccg
acgcgtcgtaccaaagcggtcggcaagattgtcgaggtgctgggtgacaacatgggaacc
ggcatggcggtggatatcgcgttgcgtagccatgagatcccccatacttggccggagcag
gttgagcgccaggtggcggacctcagcgaacaggtgccagaaaatgccaaggctgggcgc
gtggatttgcgcgatctaccgttggtgactatcgacggcgaggacgcccgcgactttgac
gacgcagtgtattgcgagaagaaacggggcggtggttggcggctgtgggtcgctattgcc
gacgtcagttactatgtacgtcccaacaccgcgttggatcatgaagcgcgcagccgtggc
aactcggtctacttcccttcccaggtggtgccgatgttgcctgaggtactctccaacgga
ctatgctcgctcaacccgcaagtcgatcgcttatgcatggtgtgcgagatgaccgtcgcg
gccagcgggcgcctctcctcttacaagttttacgaggcggtgatgagctctcatgcgcgt
ctgacctataccaaggtggcgcacatcttggccggcgatgcggagttgcgtgagcactac
catgcgctggtcaagccgctagaagagttacatgccctgtacaaggcgctggatcacgcc
cgcgagcaacgcggtggcatctctttcgagacggaggaggccaagtttatctttaacgcc
gagcgacgcatcgagcgtatcgaaccgacggtacgcaacgacgcccataagttgattgaa
gagtgtatgattctggccaacatctcggcggcgcgctttatggagaaatatcatgagccg
gcgctgttccgtattcacgataagcccagcgaggatcatgtcatggcgctacgcagcgtc
ctggctgagctggggctatcactcggtggtggaacacaaccggagccgaaggattacgcg
ttgctgatggatcaggtggccgatcgccccgaccatgagatgttgcagaccatgttgctg
cgctcgatgaaacaggcggtctacgatccggaaaaccgcggtcacttcgggttggcacta
ccggcctatgcgcactttacctcgccgatccgccgttatcctgatctgtcgttgcatcgc
ggcatcaaatacctgctggcacgtgagcaggggcgcacggagcgttggacaccgagcggc
ggctggcactaccacatggaagacatgttacagctgggtgagcattgttcgatgactgag
cggcgcgccgatgaggcgacccgtgacgtcgccgactggttgaagtgtgacttcatgcag
gatcatgttggtcagatctacggcggcatcattaccagtgtgaccggcttcggcttcttt
gtgcggctggatgatctgttcatcgatggtttggtgcatgtctcgacgttggataacgac
tactatcgtttcgatcaggtggggcagcgtctgattggcgaatcttccgggcaggtctat
cgcctgggtgataaggtcgaggtgaaggtggatgcggtacacttggatgagcgtaagatc
gacttcgcgttgatttcgacggcgcgcggcgtgcgtggggcgggtaagacggcgcgcgtc
aaagcgcaacaggcgagtaacggtaaagcgaagaagccgtcgcgcccgactcggcgcggt
ggtaagatgccggccaattttgagccggatagcgctttccgtcgtggcgatgacgccgcg
tctgccaagaaagcaaagggcaaaagcaagagtaagaagccatcggcgcagacgcgtaag
atcgctgccgccaccaaggcgaagcgggcgcgcaacaagactgccggttaa
DBGET
integrated database retrieval system
