Escherichia coli KO11FL: KO11_00715
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Entry
KO11_00715 CDS
T02104
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ekf
Escherichia coli KO11FL
Brite
KEGG Orthology (KO) [BR:
ekf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ekf03019
]
KO11_00715 (hrpB)
Enzymes [BR:
ekf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KO11_00715 (hrpB)
Messenger RNA biogenesis [BR:
ekf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KO11_00715 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_22
HA2_N
Motif
Other DBs
NCBI-ProteinID:
AFH15132
LinkDB
All DBs
Position
163461..165890
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AA seq
809 aa
AA seq
DB search
MSSLPVAAVLSELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA
ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS
FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV
LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP
RTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERAAAQSEPEILQSDLSGL
LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL
AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG
GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG
SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL
AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA
LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWKGAYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcgttgcccgttgctgccgtcttatctgaattacttaccgctctcgattgtgcg
ccgcaggtattattaagtgcgccgaccggggccgggaaatcaacctggctgccgctgcaa
ctgctggcgcatcccggcattaacgggaaaattatcctgctggagccgcgtcgtctggcg
gcgcgtaacgtcgcgcaacggctggcggagctgcttaacgaaaagccaggcgataccgtt
ggctaccggatgcgtgcgcaaaactgcgtcgggccgaatacccgcctggaagtggttacc
gaaggcgtgctgacgcgcatgatccagcgtgacccggaactgagcggtgttggactggtg
atccttgatgaatttcatgagcgcagcttgcaggcggatttggcgttggcgctgttactc
gatgtgcaacaaggtctgcgtgatgaccttaaactgctgattatgtcggctaccctggac
aacgaccgcttgcagcaaatgctgccagaagcgcctgtcgtcatctcagaagggcgctcg
tttccggttgaacgccgttatttaccgctgcccgcgcatcagcgttttgacgatgccgtt
gcggtagccaccgctgaaatgctgcgtcaggaaagcggatcattactgttatttttacct
ggcgtcggagaaattcagcgtgtgcaggaacaactggcttcgcgcatcggcagtgatgta
ttgctctgcccgctgtatggcgcgttgtcgctgaacgatcagcgaaaagcgatcctcccg
gcaccgcaagggatgcgcaaagtggtgctggcgaccaatattgctgaaaccagtttaacc
attgaaggtattcgtctggtggtggattgtgcccaggagcgtgtggcgcgttttgatccg
cgcacggggcttacgcgactgattactcaacgcgttagccaggcatccatgacgcagcgt
gccgggcgcgccgggcgtctggagccgggtatctgcctgcatttaatcgccaaagaacaa
gcagaacgcgccgcggcgcaaagtgaaccggagatcttacaaagcgatctttccggtttg
ctgatggaattactgcaatggggatgcagcgatccggcgcagatgagctggctggatcaa
ccgccagtagtgaatctactggccgcgaaacgtctgttacaaatgctgggggcactggag
ggtgaacggcttagtgcgcaagggcaaaaaatggcagcgctgggtaacgatccgcgttta
gcggcaatgctggttagcgcgaagaacgacgacgaagctgctaccgcggcaaaaattgcc
gccattctcgaagagccgccacggatgggcaatagtgacctgggcgtggcgttttcgcgc
aatcaaccagcctggcagcaacgtagtcagcaactgttaaaacgcttaaacgtacgtggc
ggtgaggcagacagttcgcttatcgcgccgctacttgccggggcgtttgccgatcgcatt
gctcgtcgccgtgggcaagatggacgctatcaactggcaaacggcatgggagcgatgctc
gatgccaacgacgcgctaagccgccacgaatggttgatcgcaccgttattattgcagggc
agcgcctcgccggatgcgcggattttactggcgctgctggtcgatattgatgagttagta
caacgctgcccgcagctggtacagcagtctgacactgtggagtgggatgacgcgcaaggt
acgctgaaagcctggcgtcggctacaaatcggtcagttgacggtgaaagtgcagccgctg
gcgaaaccgtcagaagacgagttgcatcaggcgatgcttaatggcatccgtgataaaggt
ttaagcgtgctcaactggacggcggaagcggaacagctacgcttgcgtttgttatgcgcc
gcaaagtggttgccggaatatgactggccagcggttgatgatgaaagtttattggcagcg
ctggaaacgtggctgctgccacatatgactggcgtacattcactacgcggcctgaaatca
ctcgacatttatcaggcactacgcggattacttgattggggaatgcagcaacgtctggat
agtgaattgcctgcgcattacactgtgccgacgggaagccggatcgccattcgttatcat
gaagataacccgcccgcgctggcggtgagaatgcaagagatgtttggcgaggccaccaat
ccgacgatcgcccaggggcgcgtgccgctggtgctggagttgctttcacctgcccaaagg
ccattacaaatcacacgagatttgagcgccttctggaaaggagcgtaccgtgaggtgcaa
aaagagatgaaagggcgttatcccaaacatgtctggccggacgacccggcaaatactgca
ccgacgcgacggacgaaaaagtattcgtaa
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