Erythrobacter litoralis HTCC2594: ELI_04875
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Entry
ELI_04875 CDS
T00315
Name
(GenBank) DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eli
Erythrobacter litoralis HTCC2594
Pathway
eli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELI_04875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eli03019
]
ELI_04875
Enzymes [BR:
eli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ELI_04875
Messenger RNA biogenesis [BR:
eli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ELI_04875
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UTP25
ResIII
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ABC63067
UniProt:
Q2NB74
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All DBs
Position
1004335..1005813
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AA seq
492 aa
AA seq
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MTITTFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFML
PSIDRLREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKD
RNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVP
AERQTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEM
ILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKR
AKTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDE
RAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQKQRGPRIKPKPKARKQGGTNRS
KPQGGNPQSAGGPVENPVKKQGTSKQKHPARKGRPGGRPGGQRPQGAERAEQGGGGRPMR
RKRIGGGGQRRG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgacaattactactttcgaccagctcggtctttcgcagcctgtgctgcaagccctcgac
atgaagggttacaacgagcccaccccgatccaggcacaggcgatcccgccggtgctggaa
ggacgcgacctgctggggatcgcccagacagggaccggcaagaccgccgcattcatgctg
cccagcatcgaccggctgcgcgaggccgacaaccagacgccgttcaaatcctgccgcatg
ctggtgctggcgccgacccgcgaactcgccgggcagatagcccagtcggccaaggattac
ggcgcaatggcgggcctcaaggttcactcgatcgtcggcggtacgtccgtcggcaaggat
cgcaacaagctgcaccgcggcacagacattctcgtcgcgaccccgggccgcctgctcgac
ctgatcgaccagaaggcgttcaagctgaacgcggtcgagatcctcgtgctcgacgaggcc
gaccagatgctcgatctcggattcattcatgcgctgcgccagatcaacgatctcgtaccg
gcagagcggcagacgctgttcttcagtgccaccatgccaaagcagattcaggaactcgtc
ggcaaatattgtcgcaacccggtcaaggtctcggtcacaccggctgccactaccgcagag
cggatcgaccagtatctcttcatggtccaacaggacgagaagcaggccctgatcgagatg
attctcaaaggtcgtcatgcggtcccgggcaagcaggagcgaatcctcgtctttacccgg
accaagcatggtgcggatcgggtggtgaagaagctgcgccaggccgggatcgagtccaac
gcgattcacggcaacaagagccagccgcagcgccagcgcgcgctcgatgaattcaagcgc
gccaagaccccgatcctgatcgccaccgatgtcgccgcgcgcgggattgatatcccgggc
gtcagccatgtcatcaattacgagttgcccaacgtgccggagcagtacgtccaccgcatc
gggcggacggcgcgtgccggcaaggacggggtcgcgattgccttctgcgccgaggacgag
cgcgcttacctgaaggatatccagaagaacaccgacgccgaattcgatcgcttgccgctg
ccggaaaatttccgcgcggtggttgaaggcgtcggcccgaccaagcgcgagcagaagcag
cgtggaccgcgcatcaagccgaagcccaaggcgaggaagcagggcggaacaaaccgtagc
aagccgcagggtggaaacccgcaaagcgcgggtggcccggtcgagaacccggtcaagaag
cagggcacgtccaaacagaaacatcctgcgcgcaagggcaggcccggcgggcggccgggt
ggccagcgtccgcagggtgccgagcgtgccgagcagggcggcggcggtcgtcccatgcgg
cgcaagcggatcggcggcggcggacagcggcgcggctga
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