Erythrobacter litoralis DSM 8509: Ga0102493_111761
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Entry
Ga0102493_111761 CDS
T04740
Name
(GenBank) bifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
elq
Erythrobacter litoralis DSM 8509
Pathway
elq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
elq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Ga0102493_111761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elq03400
]
Ga0102493_111761
Enzymes [BR:
elq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ga0102493_111761
DNA repair and recombination proteins [BR:
elq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Ga0102493_111761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AOL22783
UniProt:
A0A074MDK5
LinkDB
All DBs
Position
complement(858622..861114)
Genome browser
AA seq
830 aa
AA seq
DB search
MARAREKDALAEYNAKRDFDATPEPAGDAGSGTGNSFMVQKHDATRLHWDLRLEMDGVLK
SWAVTKGPSLDPATKRLAVRTEDHPLSYATFEGTIPKDQYGGGTVMLWDRGTWAPVEGTK
ASDIEQGHLHFCLEGERMKGEWLLIRLKPKGNEKRENWLLRKLDDEYAGGTDDLVERELT
SISTGRSMAEIAAGKETAKQQDGSLVARMKPKSGRTRKPRKPAPMPSFRKPQLATLVDDV
PAGNGWMHEIKFDGYRALVAARGEEVRIYTRSGKDWTDKFAPLARAFAGLDLPCALIDGE
IVATDDNGNPDFSTLQAVLKRGHGAQGAGDALSFHAFDLLGAEGEDFAREPNIERKERLE
ALLKRAEPPIHVADHVIGAGERLLKTMCDAGQEGIISKKIDAPYRHSRSKAWVKVKCTRR
QEFVIIGWKPSKAKGRPFSSLLMAQYEGESLVYKGNVGTGFDTGDFDALSARLKRLERKT
PPAEVEKAKARSVRWVTPKLVAEVAFAEFTGDGNIRHGSYLGLREDKDAKDVTPERPSAS
PPPEQEVTISSRERVIFPGSGATKGNLADYYEAVAPIMLPFAANRPVSLVRCPQGRAKKC
FFQKHDNGGFGDAVRRVAIREKDGGHEDYLFIEGARGILQCVQMGTIEFHGWGARTDNVE
APDRMVFDLDPDEGLDFGDVKGAARDIRYRLADLGLTSFAMLSGGKGVHVVVPLLPGHSW
EAHKDFSRRFAEALSLAQPDRFTATMSKAKRKGKIFIDWLRNQRGSTAVLPYSARAREGA
PVAVPLGWNELQEAETAQAFTIGDADRLLKRARGKTLAGWGFAEQRLPDL
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcgagggaaaaagacgcgctcgccgaatacaacgccaagcgcgatttcgac
gccacgcccgaacccgccggagatgccggcagcgggacgggcaacagcttcatggtgcaa
aagcacgacgcgacccggctgcactgggacctcaggctcgaaatggacggggtgctgaaa
agctgggcggtgacgaaaggcccctcgctcgacccggcgaccaagcggctggcggtcagg
accgaggatcacccgctgtcctatgcgaccttcgagggcacgatccccaaagaccagtat
ggtggcggcacggtgatgctgtgggaccgcggcacctgggctccggtggaaggcacgaag
gcctccgatatcgagcaggggcatctccatttctgtctcgagggcgagcggatgaagggc
gaatggctgctcatccggctgaagcccaaaggcaatgagaagcgcgagaactggctgctg
cgcaagctcgacgacgaatatgcaggcggcacggatgatctcgtcgagcgcgaactcacc
agcatttcgacgggccgctccatggccgagatcgccgcgggcaaggagacggcaaagcag
caggacggcagcctcgtcgcgcggatgaagcccaaatcgggcagaacgcgaaagccgcgc
aaacccgctccgatgccctccttccgcaagccgcaactcgccacgctcgtcgacgatgtc
ccggcgggcaacggctggatgcacgagataaagttcgacggctaccgcgccctcgttgcc
gccaggggcgaggaagtgcgcatctacactcgttcgggcaaagactggaccgacaagttc
gccccgctcgctcgcgccttcgccgggctcgacctgccttgcgcgctgatcgacggcgaa
atcgtcgccaccgacgacaacggcaatccggacttctcgaccctgcaggccgtgctcaag
cgcggtcacggggcgcagggggcaggtgatgcgctgtcattccacgccttcgaccttctc
ggggcggagggcgaggatttcgcacgcgaacccaatatcgaacgcaaggagcgactggag
gcgctgctgaagcgcgcagagccgccgatccacgtcgccgatcacgtcatcggtgcgggc
gagcggcttctgaaaacgatgtgcgatgccgggcaggaagggatcatttccaagaagatc
gacgcgccctaccgacattcgcgcagcaaggcctgggtcaaggtcaagtgcacgaggcgg
caggaattcgtcatcatcggctggaaaccgtcaaaggcaaagggccgccccttttcctct
ttgctgatggcccagtacgaaggcgagtcgctggtctacaagggcaatgtcgggacaggc
ttcgacacaggcgatttcgacgcgctgtcggccaggctcaaacggctcgaaaggaagact
ccccccgccgaagtcgaaaaggccaaggcacgctcggtgcgctgggtgacgccgaaactg
gtagccgaagtcgccttcgccgagtttaccggcgatggaaacattcgccacggcagctat
ctggggctgcgcgaagacaaggacgcaaaggacgtgaccccggagcgaccttctgcctcc
cctccgcccgagcaggaggtcacgatctccagccgtgaaagggtcatctttcccggctcg
ggtgcgaccaagggcaaccttgccgattactacgaggcggtggcgccgatcatgctgccc
ttcgccgccaatcgcccggtcagcctcgtgcgctgcccgcaggggcgggcgaagaaatgc
ttcttccagaaacacgacaatggcggcttcggcgacgcagtgcgccgtgtcgcgatccgc
gaaaaggacggcgggcacgaggactatctcttcatcgagggcgcgcgcgggatcctgcaa
tgcgtccagatgggcacgatcgaattccacggctggggcgcgcgcaccgacaatgtcgag
gcgcccgaccggatggtgttcgacctcgacccggacgagggcctcgatttcggcgacgtg
aaaggcgccgcgcgcgacatccgctaccggctcgccgatctcggcctcaccagcttcgcc
atgctttcgggcggcaagggcgtccatgtcgtcgtcccgctcctgccaggccattcatgg
gaagcgcacaaggatttctcgcgccgctttgccgaagcgctgagcctcgcccagcccgac
cgcttcaccgcgacgatgagcaaggcgaagcgcaagggaaagatcttcatcgactggctg
cgcaaccagcgcggcagcaccgcggtcctgccctattcggcccgcgcgcgcgagggcgcg
ccggtcgcagtcccgctcggctggaacgaattgcaggaggccgagacggcgcaggccttc
acgatcggcgatgcggacaggctgctcaaacgcgcccgcggcaagacgctcgccggatgg
ggcttcgccgagcagcgcctgcccgacctctag
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