Esox lucius (northern pike): 105008546
Help
Entry
105008546 CDS
T04894
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
els
Esox lucius (northern pike)
Brite
KEGG Orthology (KO) [BR:
els00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105008546 (col25a1)
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105008546 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105008546
NCBI-ProteinID:
XP_019899922
LinkDB
All DBs
Position
LG24:28977184..29364451
Genome browser
AA seq
685 aa
AA seq
DB search
MKVAETMGAPKSAEKMETEASSLKRQYRCTTVMNVIWNFFSVASLAFCILLSVQTSEIKD
RVLDLETGQSEHVFHRVPGFSVDQFNSLIQDRVEELLSQRSYEHFAKIRIARQVSPTPNC
NCPPGPPGKRGRRGQNGEPGPPGPPGPQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKR
RLIKGDQGSAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGTPGEHGQMGPEGP
PGQKGSLGPPGVPGVDGLKGDVGTSGLDGIPGAKGETGEQGEKGDMGEDGQKGEVGEKGD
AGSTAAGIKGEPGEPGRGGTKGEPGLPGLPGLPGVKGEPGFLGPQGEPGLPGLPGTKGER
GELGLPGKGERGEIGPAGQKGGPGEAGTPGPKGSKGATGDKGDVGFMGPRGPPGQKGDQG
ATEIIDYNGNIQEALQKITTLTVTGPPGPPGPTGPAGIKGDQGMPGLPGLDGERGFKGSK
GDMGIPGASGDKGSVGLPGVPGINGLKGDKGVAGPLGPQGPSLIGHPGAPGPDGPPGPMG
PHGFPGPKGEAGNHGLKGVRGEPGNKGERGPLGLPGMDGPMGPSGPAGLNGERGERGAAG
EPGPRGPYGLPGAAGTPGLDGLPGLRGEKGDLGERGEKGFRGFKGDKGEPGQPGLDGLDA
PCQLGPDGLPMPGCWQKGITPWLVA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttgcggaaaccatgggagcaccgaagtccgcggaaaaaatggagacagaagca
tcatctttaaagcgacaatatcgctgcacaactgtcatgaacgttatttggaatttcttc
tccgtggcgtctcttgccttttgcattttattaagtgtgcaaacatccgagatcaaggac
agagttctggatttggaaactggtcaaagcgagcacgtatttcacagggttcccggcttt
tccgttgatcagtttaattcattgattcaagatagagtggaagagctcctttcacagcgc
tcctatgaacatttcgcaaagataaggattgcccgacaagttagccctactcctaactgc
aattgccccccaggcccgccaggaaagcggggaagaagaggtcagaatggcgaacctgga
cctcctggtcctcctggtccacagggtgaaaagggggatcaaggtgaccaaggaccgcgg
atggtcttccctaagatcaatcatggctttctttctgctgaccagcagctcataaagcgg
aggcttattaagggtgatcagggttcagcaggtccaccagggcctccggggcccccaggt
ccccccgggcccagagggccaccaggtgacacaggcaaggatggaccccggggagtgcca
gggctgccgggagatcctgggactccaggggagcatgggcaaatgggacctgaggggcca
ccaggacaaaagggttctcttgggcctcctggcgttccaggtgttgacggactgaaaggg
gatgttggcacgtcaggattagatggaatccctggtgccaagggtgaaacgggagagcaa
ggtgaaaagggtgacatgggtgaagatgggcaaaaaggtgaagttggggaaaagggtgat
gcagggtccactgctgcaggcattaagggtgaacccggagagccaggacgtggaggaaca
aagggagagccaggacttccagggctacctggacttccaggggttaagggtgagcctgga
ttcctaggacctcagggagaaccagggctcccaggattaccaggaaccaagggagagaga
ggggagttgggcctaccaggcaagggggagcggggcgagattggaccagcaggtcaaaag
ggaggaccaggagaggcaggaacgccaggccctaaaggttccaagggagcgacaggagac
aaaggagacgtgggcttcatgggaccaagggggcccccaggacagaaaggtgaccaagga
gccacagaaatcattgattacaatggaaacatccaagaggctttgcagaagattaccact
cttacagtgacgggtccccctgggccacctggaccaactggaccagcaggaatcaaggga
gatcaaggcatgcctggcctccctggactggatggtgaaaggggtttcaaaggttccaaa
ggagacatgggaattcctggtgcttctggagataaaggatctgttggtttacccggagta
ccaggcatcaacggcttgaaaggagataagggtgttgctggtccccttggtcctcaaggg
ccctctttaattggccatcctggagcacccgggcccgatggccccccaggccccatggga
ccccatggcttccctggaccaaagggggaggctgggaatcatggcctgaagggagttcgt
ggtgagccagggaataagggagagagaggaccacttggccttccgggtatggatggccct
atgggtccctccggtccagccgggttaaatggggaaagaggggaaagaggagctgcaggt
gaacctggaccaaggggaccctatggacttccgggagcagctggaacacctggccttgat
gggttgccaggcttaaggggagagaagggcgaccttggggaaagaggagaaaaggggttc
cggggctttaagggtgataagggagagccagggcagcctggtctggatgggctggatgcc
ccatgccaattgggcccagatggactaccaatgcctggttgttggcaaaagggaatcaca
ccttggctggtggcttga
DBGET
integrated database retrieval system
