Escherichia marmotae: C1192_13540
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Entry
C1192_13540 CDS
T05353
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ema
Escherichia marmotae
Pathway
ema03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1192_13540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ema03019
]
C1192_13540
03009 Ribosome biogenesis [BR:
ema03009
]
C1192_13540
Enzymes [BR:
ema01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1192_13540
Messenger RNA biogenesis [BR:
ema03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1192_13540
Ribosome biogenesis [BR:
ema03009
]
Prokaryotic type
rRNA helicases
C1192_13540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AUT28011
UniProt:
A0A370V8N9
LinkDB
All DBs
Position
complement(2628759..2630642)
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AA seq
627 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPQTERRGGGRGVGGERREGGRNFSGERREGGRGDGR
RFSGERREGRAPRREESTGRRRFGGDA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtatcccacatctg
ctgaatggccgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattc
tctttacctctgctgcaaaatcttgatcctgagctgaaagcaccacagattctggtgttg
gcaccgacccgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacac
atgcgcggcgtaaacgtggttgccctttacggcggccagcgttatgacgtgcaattacgt
gccctgcgtcaggggccgcagatcgttgtcggtactccgggccgtctgctggaccacctg
aaacgtggcactctggatctctctaaactgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgccctgacatc
agccagagctactggactgtctggggtatgcgcaaaaacgaagcgctggtacgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaa
gtggctgaagcccttgagcgcagcggttacaatagtgctgccctgaacggtgacatgaac
caggcactgcgtgagcagactctggaacgtctgaaagatggtcgtctggatatcctgatc
gcgaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtggttaactac
gatatcccgatggattccgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgtgcgggtcgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatt
gaacgtactatgaaactgaccattccagaagtagaactgccgaacgcagaactgctgggc
aaacgccgtctggaaaaatttgctgctaaagtacagcagcaactggaaagcagcgatctg
gatcaataccgtgcactgctgagcaaaattcagccgactgcagaaggtgaagagctggat
ctcgaaactctggctgccgcactgctgaaaatggcacagggcgaacgtactctgatcgtg
ccgccagatgcgccgatgcgtccgaaacgtgagttccgtgaccgtgatgatcgtggtccg
cgcgatcgtaacgaccgtggcccgcgtggtgaccgtgaagatcgtccgcgtcgtgaacgt
cgcgatgttggcgatatgcagttgtaccgcattgaggtgggtcgtgatgatggcgttgaa
gttcgtcatatcgttggcgcaattgctaacgaaggtgacatcagcagccgttacatcggt
aacatcaagctgtttgcttctcactccaccatcgaattgccgaaaggtatgccgggtgaa
gtgctgcaacactttacgcgtacccgcatcctcaacaagccgatgaacatgcaactgctg
ggcgatgcacagccgcaaactgaacgtcgtggtggtggtcgtggtgtcggtggcgagcgt
cgtgaaggcggtcgcaacttcagcggtgaacgccgtgaaggtggtcgtggtgatggtcgt
cgcttcagtggcgaacgtcgcgaaggccgtgcaccgcgtcgtgaagagtctaccggtcgt
cgtcgtttcggtggcgatgcgtaa
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