Endozoicomonas sp. GU-1: O2T12_08550
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Entry
O2T12_08550 CDS
T08918
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eng
Endozoicomonas sp. GU-1
Pathway
eng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O2T12_08550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eng03019
]
O2T12_08550
Enzymes [BR:
eng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O2T12_08550
Messenger RNA biogenesis [BR:
eng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O2T12_08550
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WBA84007
LinkDB
All DBs
Position
1972558..1973937
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AA seq
459 aa
AA seq
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MTFANLGLSLPILQAITEQGYKQPSPIQAEAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL
ELLSRGERARPNQVRALVLTPTRELAAQVAESVATYGRHLPIRSSVVFGGVKINPQMMNL
RRGADILVATPGRLLDLYNQNAVKFKHLEVLVLDEADRMLDMGFIHDIRRILALLPQQRQ
NLMFSATFSDDIRQLAKTIVHHPVEIDVSPRNTTARTVRQCVYPVDKSKKPALLTRLIKE
HNWQQVLVFTRTKHGANRLTRHLEGKGILAAAIHGNKSQGARTRTLAEFKNNDITALVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGHAVSLVCADESKQLRDIER
LINQQLPREVISGFEPVNEVPVTQLSGKPPKPKKPKKSRASHRPGQESGGNGKAPKRQAG
QSNERRKSGGMESGRVFAENHRRPRRRKVTNPQSTSASV
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgccaacctcgggctttccctgccgatcctgcaagccattaccgaacagggc
tataaacagccttctcctattcaggcagaagccataccggcggttctggcaggacaggat
gtgatggcagcggctcagacaggcaccggtaaaacagccggttttacgctgccgatactg
gagctgctcagtcgtggcgagcgggcaaggcccaaccaggttcgggcactggtcctgacg
ccgacccgtgagctggcagcccaggtggcagagagtgttgccacctacggtcggcatttg
ccaatacgttcttcagtggtttttggcggggtcaaaatcaacccgcaaatgatgaatctg
agacgtggtgcagatatccttgtggccacacccgggcgacttctggatctttacaaccag
aatgcggtgaagttcaaacacctggaagtgctggttctggatgaagcagaccggatgctg
gatatggggtttattcacgatattcgtcgtattctggcgctgttgccccagcaaagacag
aacctgatgttttcggcaacgttttccgatgacatacgacagctggcaaaaactattgtg
caccatccggtagagattgacgtttctccccgcaatacaacggccagaacggtcaggcag
tgtgtgtatccggtggataaaagtaaaaaaccggcactgctgacccgtttgattaaagag
cataactggcaacaggtgctggtatttacccggaccaagcacggtgccaaccgcttaacc
cgtcatctggaaggtaaaggcattctggcggcggcgattcatggcaataagagccaggga
gcccgtaccaggacccttgctgaattcaaaaataatgacattacggccctggtggcaacg
gatatcgctgcccgtgggctggatattgaccagttgccgcaggtggtgaacttcgacctg
cccaatgtgccggaggattatgtgcatcgtatcgggcgaacagggcgcgcgggggcggat
ggtcatgcggtctcgctggtctgtgcagacgagagcaagcagcttcgggacattgaacgg
ttgatcaatcagcagttacccagggaggtgatctccgggtttgagccggttaatgaggtg
ccggtgactcagttgtccggtaagccaccgaaacctaaaaagcctaaaaagtccagggct
tctcacaggcccggacaggagagtggcggaaacggtaaggcacctaagcggcaggcaggg
cagagtaatgagaggagaaagtccgggggaatggagtcagggcgtgtgtttgctgaaaac
catcgcaggccgcgaagacgaaaagtgaccaacccgcaaagtacttctgcttctgtataa
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