Ensifer sp. PDNC004: JVX98_27320
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Entry
JVX98_27320 CDS
T09472
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
enp
Ensifer sp. PDNC004
Pathway
enp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVX98_27320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enp03019
]
JVX98_27320
Enzymes [BR:
enp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JVX98_27320
Messenger RNA biogenesis [BR:
enp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JVX98_27320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
UTP25
Motif
Other DBs
NCBI-ProteinID:
QRY68010
LinkDB
All DBs
Position
complement(3957315..3958865)
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AA seq
516 aa
AA seq
DB search
MSTFKDLGLSEHILETLSANGFEKPTPIQAQAIPLVLKGNDLIGLAQTGTGKTAAFGLPM
IEKLVAEGKRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKQIAELAGEYLTNPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKKT
LTENPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEIRLLRD
IEKLMGINIAVASGEAPADQARPAKGRGGRGNNGAGHRKGNGGGHHQNGGRPPRRERPAG
EPVAATSGFTGDDLLRDERRPQRQERRDHGHPQTDGRGEGNRNHEGKKHHGRPGQKQGDR
RDRNQGGRNENRGGGERREGGQGQRRGNGGNRGHQG
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgtccacctttaaagatctcggcctctccgagcacattctggaaaccctgtctgccaac
ggcttcgaaaagccgaccccgatccaggctcaggcgatcccgctggtgctgaagggcaac
gatctcatcggtctcgcccagaccggcaccggcaagacggccgccttcggcctgccgatg
atcgagaagctcgttgccgaaggcaagcgccccgatccgcgcaacattcgcgccctggtt
ctggcgccgacccgcgaactggtcaaccagatcgccgccaacctcaagctgttcgtcaag
aagtcgccgctgaagatcggcgtcgtcgtcggcggcgtctcgatcaacaagcagaccgaa
caactcgcccgcggcgtcgacatcctggtcgcaacgccgggccgcctgctcgacctcgtc
gcccgcaaggcggtgacgctgacgcagggccgctacctggtgctcgacgaagccgaccag
atgctcgacctcggcttcatccacgacctgcgcaagatctccaagctggtgccgaagaac
cgccagacgctgctcttctcggccaccatgccgaagcagatcgccgagcttgctggcgag
tacctgaccaacccggtcaaggtcgaagtcacgcctccgggcaaggctgccgacaaggtc
gaacaatacgttcacttcgttcccggcaaggacctgaagacgaccatcctcaagaagacg
ctgacagagaacccggacggcctgtcgctgatcttcagccgcaccaagcacggcgccgag
aagctgatgaagcatctcgaccacgtcggcttcaaggccgcctcgatccacggcaacaag
agccagggccagcgcgagcgcgcgctcaaggccttccgtgacggcgagatccgtgtgctg
gtcgcgaccgacgtcgccgcccgcggcatcgatatccccggcgttacccacgtttacaac
tacgacctgccggaagtgccggatgcctatgttcaccgcatcggccgcaccgcgcgcgcc
ggccgcgacggcatcgccatcgccttctgcgcgccggacgaaatccgcctgctgcgcgac
atcgagaagctgatgggcatcaacattgccgttgccagcggcgaggctcccgccgaccag
gcgcgtccggccaagggccgcggcggccgaggcaacaacggcgccggccaccgcaagggc
aatggcggcggtcatcaccagaacggcggccgtccgccgcgtcgcgagcgcccggccggc
gagccggttgcagccaccagcggctttaccggcgacgaccttttgcgcgacgagcgccgc
ccgcagcgccaggagcgccgcgatcacggccatccgcagaccgacggccgtggcgaaggc
aaccgcaaccacgaaggcaagaagcaccacggacgtcccggccagaagcagggcgaccgt
cgtgaccgcaaccagggcggccgcaacgaaaaccgtggcggtggcgagcgtcgcgaaggc
ggccagggccagcgtcggggcaatggcggcaatcgcggccaccagggctga
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