Enterobacter sp. 638: Ent638_1629
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Entry
Ent638_1629 CDS
T00507
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ent
Enterobacter sp. 638
Pathway
ent03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ent00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ent638_1629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ent03400
]
Ent638_1629
Enzymes [BR:
ent01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ent638_1629
DNA repair and recombination proteins [BR:
ent03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ent638_1629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABP60308
UniProt:
A0A9J9GFU8
LinkDB
All DBs
Position
complement(1780128..1783574)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPGKAGDQRQLGELTGAACATLVAEIAERHAGPVVLVAPDMQNALRLHDEIR
QFTDSLVFNLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGERLSRDALRSQLDSAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPALFSYFPAKTLIVNTGDLESSATRFENETR
ARFENRGVDPMRPLLPPEQLWLRTDALFSELKKWPRVQLKTENLPEKAANTNLGFEKLPD
LSVQAQQKSPLDNLRKFLESFTGPVIFSVESEGRREALGELLARIKVSPKRILRLDEATD
AGRYLMIGAAEHGFIDTLNNRALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHVG
QPIVHLEHGVGRYAGMTTLETGGIKGEYLMLTYSGDAKLYVPVSSLHLISRYAGGAEDNA
PLHRLGGDVWARARQKAAEKVRDVAAELLDIYAQRAAKSGYAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRATFLAVENNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQAREGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLFNDVENIQKTADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIVIERADHFGLAQLHQLR
GRVGRSHHQAYAWLMTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKKESELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG
NEKGGTVEFAEKNHVDPMWLIGLLQKQPQHFRLDGPTRLKFTQELADRKTRMEWVRNFMR
QLEENTVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgttattccttgcccggcaaagcgggcgaccaacgtcagctaggt
gaactgacgggtgcagcctgcgccacgcttgtggcggagatcgctgagcgccatgcgggt
ccggtggtcctggtagccccggatatgcaaaacgcattgcgtctgcacgacgaaattcgc
cagtttaccgacagtctggtctttaacctggccgactgggaaacgctgccgtacgacagc
ttctccccgcaccaggagatcatctcctcgcgcctgtcgactctgtatcagttgccgacc
atgcagcgcggcgtattgattgtcccagtgaatacgttgatgcagcgcgtgtgtccgcac
agctatctgcacggtcacgcgctggtgatgaaaaaaggtgaacggttatcgcgcgacgcc
ctgcgttcgcagcttgatagcgccggttatcgccatgtcgatcaggtgatggagcacggc
gaatacgccacgcgcggtgcgctgttggatctgtatccgatgggcagtgaccagccgtat
cgcctggatttcttcgacgatgaaatcgacagtctgcgcgtgtttgacgccgatacccag
cgcacgctggaggaagtcgatgccatcaatttactgcctgcgcatgaattcccaacggat
aaaaccgccatcgagttgttccgcagccagtggcgcgacaagtttgatgtgaagcgcgac
gccgaacatatttaccagcaggtgagcaaaggcacgctgcctgcggggattgaatactgg
cagccgctgttctttagcgagccacttcccgcgctgttcagctatttcccggcgaaaacg
ctgattgtgaacaccggcgatctggaatccagtgcaacccgttttgaaaacgaaacccgt
gcgcgattcgaaaaccgtggcgttgatccgatgcgccccctgctgccaccggaacagctt
tggctacgcaccgacgcgctgttttcagaactcaaaaaatggccgcgcgtgcagctcaaa
acggaaaatctgcctgagaaagccgccaataccaatctcggattcgagaaactgcccgat
ctttccgttcaggcgcagcaaaaatcgccgctggataatctgcgcaagttcctggaatcc
ttcaccggtccggtgattttctcggtcgagagtgaaggccgccgtgaagcgctgggcgaa
ctgctcgcgcgaatcaaagtgtcgccaaaacgcattttacgcctcgacgaagcgaccgat
gccgggcgctacctgatgattggtgcggctgagcatggattcatcgacacgctgaataat
cgcgcgctgatttgtgaaagcgatctgctcggcgagcgcgtggcgcgccgtcgtcaggac
agccgtcgcaccattaacccggatacgctgattcgcaacctggcggagctgcacgtgggc
cagccgatcgtgcatctcgagcacggcgtggggcgttacgcgggaatgaccacgctggaa
acgggcggcattaagggcgaatacctgatgctcacctattccggcgatgccaaactctac
gttccggtgtcttcgctgcatctgattagccgttatgcgggtggtgcagaagataacgcc
ccgctgcacaggctgggcggtgatgtctgggcgcgcgcgcgtcagaaagccgccgaaaaa
gtccgcgatgtggcggcagaattgctggatatttacgcccagcgtgccgcgaaatcaggc
tacgcgttcaagcacgacaaggaacaatatcaattgttctgcgacagtttcccgtttgaa
accacgcccgatcaggcgcaggcgataaacgccgtgctaagcgacatgtgccagccgctg
gcgatggatcgcctggtgtgcggtgacgtgggctttggtaaaaccgaagtcgcgatgcgc
gccaccttcctggcggtcgaaaataacaagcaggtcgccgtgctggtgccgaccacgctg
ctcgcccagcagcactacgacaacttccgcgatcgcttcgccaactggccggtgcggatc
gagatgctgtcgcgttttcgcagtgccaaagagcaaacacagatcctggaacaggcccgc
gaaggcaaaatcgatatcctgatcggcacccataaattgctgcaaagcgacgtgaagtgg
aaagatttgggcctgctgatcgtcgatgaagagcaccgcttcggcgtacgccacaaagag
cgcatcaaagcgatgcgcgcggacgtggatattctgaccctcaccgcgacgccgatcccg
cgtaccctgaatatggcgatgagcggcatgcgcgatctgtcgatcattgccacgccaccg
gcgcgtcgtctggcggtgaaaacgtttgtccgcgagtacgatagcctggtggttcgcgaa
gcaatcctgcgtgaagtgctgcgtggcgggcaggtttattatctctttaacgatgtcgaa
aacattcagaaaaccgccgataaactggctgaactggtgccagaggcccgcattgccatc
ggtcatgggcagatgcgcgagcgcgagctggaacgggtgatgaacgatttccaccaccag
cgttttaacgtgctggtgtgtaccacgattattgaaaccggtatcgacattccgacggcg
aacaccatcgttattgaacgtgcggatcacttcggtctggcgcagcttcatcagttgcgc
ggtcgcgttgggcgctcgcatcatcaggcttacgcatggctgatgacgccgcatccgaaa
gcgatgaccaccgacgcgcaaaaacgtcttgaagccatcgcctcgctggaagatttgggg
gcaggtttcgcgctggcgacacacgatctcgagattcgtggcgctggcgaattgctgggt
gaagatcagagcgggtccatggaaaccatcggtttctcgttgtacatggagctactggaa
aatgctgttgatgcgttgaaagctgggcgcgagccgtcgcttgaggatctcaccagccag
caaacggaggtcgaactgcgcatgccgtccctgttgcctgatgattttatcccggacgtg
aacacgcgcctgtcgttctataagcgaattgccagcgccaaaaaagaatctgagcttgaa
gaaatcaaggttgagctcattgaccgctttggtttgctgccggatccggcgcgtaacctg
ctcgacatcgcccgactgcgtcagcaggcgcagaagctgggtatccgcaagcttgaaggg
aatgagaaaggcgggacggttgaatttgctgagaaaaaccatgtcgatccgatgtggctg
atcggtttgttgcagaagcaaccacagcatttccgcctggatggcccgacgcgtctgaag
tttacgcaggaactggccgaccggaaaacccgcatggaatgggtgcgcaactttatgcgt
caactggaagaaaacacggtagcgtag
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