Exiguobacterium profundum: OE059_04420
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Entry
OE059_04420 CDS
T08917
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
epf
Exiguobacterium profundum
Pathway
epf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OE059_04420 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epf03019
]
OE059_04420 (rnr)
03016 Transfer RNA biogenesis [BR:
epf03016
]
OE059_04420 (rnr)
Enzymes [BR:
epf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OE059_04420 (rnr)
Messenger RNA biogenesis [BR:
epf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OE059_04420 (rnr)
Transfer RNA biogenesis [BR:
epf03016
]
Prokaryotic type
tRNA degradation factors
OE059_04420 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Rho_RNA_bind
DprA_WH
Motif
Other DBs
NCBI-ProteinID:
WED56108
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Position
836314..838719
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AA seq
801 aa
AA seq
DB search
MNLRDQLLEILQASEKPLSVDQLTERLQLASTDDFKELIRTLNALEEEGAIGRTRTNRYG
TLATLGQVAGIISIHQRGFGFLSVEGEAEDVFLPPDQLKDVYHGDTILVKKREDNRGKTE
GILLKVLKRGLSEFVGTYTLPSGRLDQFAFIEPDDKRINFWPVVNPDKSLGAVDGHKVVV
RITKYPDGRFAGACDVVRIIGHKNDPGVDILSIVYKHGIPTEFPEDVIAQANAVPDEADE
KDFIGRVDLRDETIFTIDGEDAKDLDDAVHVKKLDNGNYELGVHIADVSHYVKEGSPLDV
EAFERGTSVYLVDRVIPMLPHRLSNGICSLNPHVNRLTLSCVMEISPQNGKVVRHDLFPS
VIKTTERMTYTNVREIIERDDEETLKKYEPFIGEFDLMAELAEVLRKRRNSRGAINFDFA
EAKVVVNEEGKPADIVLRPRSVAEKLIEEFMLAANETVAEHFHKMDVPFIYRVHDNPKPD
KLDFFFDFVANFGVHIERIKGQTVEPKTLQKILKAIDGEPEEPVISTIMLRSMQQAKYDD
VSLGHFGLATDFYTHFTSPIRRYPDLIVHRLMRTYVFNNDLSEKTIAKYEDRLGAIAEQA
SKRERRSVDAERETQALKKAEYMEAHLGEEFDGVVAGVTNFGMFIELPNTIEGLVRLQSM
DDYYHFDESQLMLLGERTKRQFRIGDAVRVKVDAVNLDERTIDFTVVGMPKREQSSRRQP
TTIKAKGGRPKKDEKDRRGGRGRDDKKKRGKPGRPGKPGKPGEKPKRDGEKSSQGRSALD
LKKKDKHKRKGDAKRGAKKRR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttacgtgaccaattattagagattctacaggcgagcgagaaaccgctctctgtc
gatcaactgaccgagcgattacagctcgcgtcgacggatgactttaaagagctcattcgc
acattgaatgccctcgaggaagagggcgccatcggccggacgcggacgaaccgttacggg
acgctcgccacgctcggacaagtcgcggggatcatctcgattcatcagcgcggcttcggc
ttcttgtcggtcgaaggggaagcggaagatgtgttcttgccgcccgaccaactgaaggac
gtctaccatggcgatacgatcctcgtcaaaaaacgcgaggacaaccgtggcaagacggaa
gggattttattgaaagtattgaagcgcggactctccgaattcgtcgggacgtatacgctc
ccgagcggtcgactcgaccagttcgccttcatcgagccggatgacaaacgcatcaacttc
tggccggtcgtcaacccggacaagtcactcggtgccgtcgacggacataaagtcgtcgtg
cgcatcacgaagtatccggacggtcgcttcgccggtgcctgtgacgtcgtccgtatcatc
ggacataagaacgacccaggcgtcgacatcttgtcgatcgtctataagcacggcatcccg
acggagttcccggaggacgtgatcgcccaggcgaacgcggtaccggacgaggcggacgag
aaagacttcatcggacgcgtcgaccttcgtgacgagacgatcttcacgattgacggcgaa
gatgcgaaagacttggacgatgccgtccacgtcaaaaaactcgataacggcaactacgag
ctcggtgtccatatcgctgacgtctcgcattacgtgaaagagggctcaccactagacgtc
gaggcgttcgaacgtgggacgagtgtgtatctcgtcgaccgtgtcattccgatgctgccg
catcgactctcgaacgggatttgttccctcaacccgcacgtcaaccgcttgacgctcagc
tgcgtcatggagatctccccacaaaacgggaaggtcgttcgccatgatctgttcccgagt
gtcatcaagacgacggagcggatgacgtatacgaacgtccgtgagatcatcgaacgtgat
gacgaagagacattgaaaaagtacgaaccgttcatcggtgagttcgacctcatggccgag
ctcgcggaagtgcttcggaaacgtcgtaactcgcgcggtgccatcaacttcgatttcgct
gaggcgaaggttgtcgtcaacgaggaagggaagccggcagatatcgtgcttcgtccacgt
tcggtcgccgagaagttgatcgaggagttcatgctcgcggccaacgaaacggttgcggaa
cacttccacaagatggacgtgccgttcatctatcgtgtccacgacaatccgaaaccggac
aagctcgacttcttcttcgactttgtcgcaaactttggcgtgcatattgaacgcatcaaa
gggcagacggtcgaaccgaagacgcttcaaaagattttgaaggcgattgacggagaaccg
gaagagccggtcatcagcacgatcatgcttcgttcgatgcaacaggcgaaatatgatgac
gtctcgctcggtcacttcggacttgcgacagacttctatacgcacttcacgtcaccgatc
cgtcgttatccggacttgatcgtccaccgtctcatgcgcacgtacgtcttcaacaacgat
ttgtcggagaagacgattgcgaagtacgaggaccgtctcggggcgattgccgaacaggca
tcgaaacgggaacgtcgctcggtcgacgcagagcgcgagacacaggcgctgaagaaagcc
gaatacatggaagcccatctcggtgaagagttcgatggtgtcgtcgccggcgtcacgaac
ttcgggatgttcatcgagcttccaaatacaatcgaagggctcgttcgtctccagtcgatg
gatgactactatcacttcgatgagtcacagctcatgttgctcggcgagcggacgaaacgt
cagttccggattggggacgccgttcgtgtcaaagtcgatgccgtcaacttagacgagcgg
acgatcgacttcacggtcgttggtatgccgaaacgggaacagtcaagccgtcgccaaccg
acgacgatcaaagcgaaaggcggtcgtccgaagaaggacgagaaagaccgtcgtggcggt
cgcggtcgggacgacaagaagaagcgcggcaaaccaggaagacctgggaagccgggtaaa
ccaggtgagaaaccgaaacgagacggggagaagtcttcccaaggccgttcggcactcgac
ctgaagaagaaagacaagcacaaacgaaaaggcgacgccaaacgaggtgcgaagaaacgt
cgctga
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