KEGG   Exiguobacterium profundum: OE059_04420
Entry
OE059_04420       CDS       T08917                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
epf  Exiguobacterium profundum
Pathway
epf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:epf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OE059_04420 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:epf03019]
    OE059_04420 (rnr)
   03016 Transfer RNA biogenesis [BR:epf03016]
    OE059_04420 (rnr)
Enzymes [BR:epf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     OE059_04420 (rnr)
Messenger RNA biogenesis [BR:epf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     OE059_04420 (rnr)
Transfer RNA biogenesis [BR:epf03016]
 Prokaryotic type
  tRNA degradation factors
   OE059_04420 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 Rho_RNA_bind DprA_WH
Other DBs
NCBI-ProteinID: WED56108
LinkDB
Position
836314..838719
AA seq 801 aa
MNLRDQLLEILQASEKPLSVDQLTERLQLASTDDFKELIRTLNALEEEGAIGRTRTNRYG
TLATLGQVAGIISIHQRGFGFLSVEGEAEDVFLPPDQLKDVYHGDTILVKKREDNRGKTE
GILLKVLKRGLSEFVGTYTLPSGRLDQFAFIEPDDKRINFWPVVNPDKSLGAVDGHKVVV
RITKYPDGRFAGACDVVRIIGHKNDPGVDILSIVYKHGIPTEFPEDVIAQANAVPDEADE
KDFIGRVDLRDETIFTIDGEDAKDLDDAVHVKKLDNGNYELGVHIADVSHYVKEGSPLDV
EAFERGTSVYLVDRVIPMLPHRLSNGICSLNPHVNRLTLSCVMEISPQNGKVVRHDLFPS
VIKTTERMTYTNVREIIERDDEETLKKYEPFIGEFDLMAELAEVLRKRRNSRGAINFDFA
EAKVVVNEEGKPADIVLRPRSVAEKLIEEFMLAANETVAEHFHKMDVPFIYRVHDNPKPD
KLDFFFDFVANFGVHIERIKGQTVEPKTLQKILKAIDGEPEEPVISTIMLRSMQQAKYDD
VSLGHFGLATDFYTHFTSPIRRYPDLIVHRLMRTYVFNNDLSEKTIAKYEDRLGAIAEQA
SKRERRSVDAERETQALKKAEYMEAHLGEEFDGVVAGVTNFGMFIELPNTIEGLVRLQSM
DDYYHFDESQLMLLGERTKRQFRIGDAVRVKVDAVNLDERTIDFTVVGMPKREQSSRRQP
TTIKAKGGRPKKDEKDRRGGRGRDDKKKRGKPGRPGKPGKPGEKPKRDGEKSSQGRSALD
LKKKDKHKRKGDAKRGAKKRR
NT seq 2406 nt   +upstreamnt  +downstreamnt
ttgaatttacgtgaccaattattagagattctacaggcgagcgagaaaccgctctctgtc
gatcaactgaccgagcgattacagctcgcgtcgacggatgactttaaagagctcattcgc
acattgaatgccctcgaggaagagggcgccatcggccggacgcggacgaaccgttacggg
acgctcgccacgctcggacaagtcgcggggatcatctcgattcatcagcgcggcttcggc
ttcttgtcggtcgaaggggaagcggaagatgtgttcttgccgcccgaccaactgaaggac
gtctaccatggcgatacgatcctcgtcaaaaaacgcgaggacaaccgtggcaagacggaa
gggattttattgaaagtattgaagcgcggactctccgaattcgtcgggacgtatacgctc
ccgagcggtcgactcgaccagttcgccttcatcgagccggatgacaaacgcatcaacttc
tggccggtcgtcaacccggacaagtcactcggtgccgtcgacggacataaagtcgtcgtg
cgcatcacgaagtatccggacggtcgcttcgccggtgcctgtgacgtcgtccgtatcatc
ggacataagaacgacccaggcgtcgacatcttgtcgatcgtctataagcacggcatcccg
acggagttcccggaggacgtgatcgcccaggcgaacgcggtaccggacgaggcggacgag
aaagacttcatcggacgcgtcgaccttcgtgacgagacgatcttcacgattgacggcgaa
gatgcgaaagacttggacgatgccgtccacgtcaaaaaactcgataacggcaactacgag
ctcggtgtccatatcgctgacgtctcgcattacgtgaaagagggctcaccactagacgtc
gaggcgttcgaacgtgggacgagtgtgtatctcgtcgaccgtgtcattccgatgctgccg
catcgactctcgaacgggatttgttccctcaacccgcacgtcaaccgcttgacgctcagc
tgcgtcatggagatctccccacaaaacgggaaggtcgttcgccatgatctgttcccgagt
gtcatcaagacgacggagcggatgacgtatacgaacgtccgtgagatcatcgaacgtgat
gacgaagagacattgaaaaagtacgaaccgttcatcggtgagttcgacctcatggccgag
ctcgcggaagtgcttcggaaacgtcgtaactcgcgcggtgccatcaacttcgatttcgct
gaggcgaaggttgtcgtcaacgaggaagggaagccggcagatatcgtgcttcgtccacgt
tcggtcgccgagaagttgatcgaggagttcatgctcgcggccaacgaaacggttgcggaa
cacttccacaagatggacgtgccgttcatctatcgtgtccacgacaatccgaaaccggac
aagctcgacttcttcttcgactttgtcgcaaactttggcgtgcatattgaacgcatcaaa
gggcagacggtcgaaccgaagacgcttcaaaagattttgaaggcgattgacggagaaccg
gaagagccggtcatcagcacgatcatgcttcgttcgatgcaacaggcgaaatatgatgac
gtctcgctcggtcacttcggacttgcgacagacttctatacgcacttcacgtcaccgatc
cgtcgttatccggacttgatcgtccaccgtctcatgcgcacgtacgtcttcaacaacgat
ttgtcggagaagacgattgcgaagtacgaggaccgtctcggggcgattgccgaacaggca
tcgaaacgggaacgtcgctcggtcgacgcagagcgcgagacacaggcgctgaagaaagcc
gaatacatggaagcccatctcggtgaagagttcgatggtgtcgtcgccggcgtcacgaac
ttcgggatgttcatcgagcttccaaatacaatcgaagggctcgttcgtctccagtcgatg
gatgactactatcacttcgatgagtcacagctcatgttgctcggcgagcggacgaaacgt
cagttccggattggggacgccgttcgtgtcaaagtcgatgccgtcaacttagacgagcgg
acgatcgacttcacggtcgttggtatgccgaaacgggaacagtcaagccgtcgccaaccg
acgacgatcaaagcgaaaggcggtcgtccgaagaaggacgagaaagaccgtcgtggcggt
cgcggtcgggacgacaagaagaagcgcggcaaaccaggaagacctgggaagccgggtaaa
ccaggtgagaaaccgaaacgagacggggagaagtcttcccaaggccgttcggcactcgac
ctgaagaagaaagacaagcacaaacgaaaaggcgacgccaaacgaggtgcgaagaaacgt
cgctga

DBGET integrated database retrieval system