Erwinia rhapontici: LJN55_11385
Help
Entry
LJN55_11385 CDS
T08392
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
erp
Erwinia rhapontici
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
erp03000
]
LJN55_11385
Transcription factors [BR:
erp03000
]
Prokaryotic type
Helix-turn-helix
Other families
LJN55_11385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
GAF
AAA_2
AAA_5
AAA
HTH_30
Mg_chelatase
HTH_7
Torsin
HTH_23
HTH_50
AAA_3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UDQ82387
LinkDB
All DBs
Position
complement(2414364..2416139)
Genome browser
AA seq
591 aa
AA seq
DB search
MQGNSSAVSTPPFAPNPVLSDSWFRSQLYGLDRLSDDFPRIRQAELADALAHHATLQQFA
QPAIRALAEKIAEKQAVVILSDASGLVLNTFGDMQALQKAERFALAPGNLWSECGRGTNA
IGTALAIDDCCEIDGQQHFLTSNQGLYCAAIPLQSPGGQIAGVLDISGPAHFAHPHTLAW
IKDAAKHIEYLWIKQSLHPDQWMMSLHRQVQGIDRVEELLLVFSDNILMAANRVAMRELE
LGAEQLGCLTFQQLFPQLEQQANQVPQPLTTRSQQHYFFRLRAPARTHFASTAITSSTLP
FSLRDGGEKMVRLINAGVSLCLHGETGSGKEYVSRALHQQSRWHQGKFVAINCAAIPESL
IESELFGYQPGAFTGASKNGYIGKIREADGGVLFLDEIGDMPLALQTRLLRVLQEKEVAP
LGSSRSWPVSFAVICATHRNLPQLVAEGAFREDLLYRLQEFSLTLPPLRDWAELPAFIRQ
LWQELGGEQRGIEMTPLLLDTLAQHPWPGNVRQLRSVLKVLLALADDNDVLDCDSLPAEY
QLAVSEPLPALQQHDEQLIAATLQRFNGNVSKTAEALGVARSTLYRRAARK
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgcagggaaattcgtcagccgtcagtacgccaccgtttgcgccaaacccagtgctgagt
gactcctggtttcgcagccagctttacggtctggatcgcctgtccgacgactttccccgc
attcgccaggcagaactggccgatgctctcgcccaccacgccacgctgcaacagtttgcc
cagcctgccatccgggcattagccgagaaaattgccgagaaacaggccgtggtgatcctg
tcggatgccagcgggctggtgctgaacacctttggtgatatgcaggcgctgcaaaaagcg
gaacgctttgcgctggcaccgggcaatctctggagtgagtgcgggcgcggcaccaatgcc
atcggcaccgctctggcgattgatgactgttgtgaaatcgacggccagcagcattttctc
accagcaaccaggggctgtattgcgcggcgatcccgctgcaaagccctggtggacagatt
gccggggtgctggatatctccggcccggcacactttgcgcatccgcataccctggcctgg
atcaaagacgccgcgaagcacattgaatatctgtggatcaagcagagcctgcaccccgat
cagtggatgatgagtctgcaccgccaggttcagggcattgaccgtgtggaagagttgctg
ctggtgttctctgacaatattctgatggccgccaaccgcgtggcgatgcgtgaactggaa
ctgggagcggaacagttgggttgcctgaccttccagcagctgttcccacagctcgaacag
caggcaaaccaggtgccacagccgctcaccacccgcagccagcagcactattttttccga
ctgcgtgccccggcccgcacacactttgcctcgaccgccatcacctcctccactctgccg
ttctcgctgcgtgatggcggcgagaagatggtgcggctgatcaatgcgggggtgtcgctg
tgcctgcatggagaaaccggcagcggtaaagaatatgtcagccgggcgctgcatcagcag
agccgctggcatcaggggaagtttgtggcgatcaactgcgcggccatcccggagtcactg
atcgaatcagagctgtttggctatcagcccggtgcctttaccggggccagtaagaatggc
tatatcgggaaaattcgtgaagctgacggcggcgtgctgttccttgatgaaattggcgat
atgccgctggcgctgcaaacccgtctgctgcgcgtgttgcaggagaaagaagtggccccg
ctcggctccagccgcagctggccggtgagttttgcggtgatctgcgcgacccaccgtaat
ctgccacagttagtggctgagggtgcgttccgtgaggatctgctttatcgcttgcaggag
ttctctctgacgctgccaccgttgcgcgactgggcagaactgcctgcttttattcgccag
ctctggcaggaactgggcggtgagcagcgtggtattgagatgacgccgctgctgctggat
actctggcgcaacatccgtggccgggtaacgtgcgtcagttacgcagcgtactgaaagtg
ctgctggcgctcgccgatgataacgacgtgctggattgcgacagcctccctgcggagtat
cagctggcggtgagtgaaccgctgcctgcactgcaacagcatgatgaacaactgatcgcc
gccactctgcaacgcttcaacggcaatgtgagcaaaacggcagaagcgctgggcgtggca
cgcagcacgctgtatcgccgtgctgcgcgcaaataa
DBGET
integrated database retrieval system
