Etheostoma spectabile (orangethroat darter): 116705635
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Entry
116705635 CDS
T08457
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116705635
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116705635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116705635
NCBI-ProteinID:
XP_032397855
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All DBs
Position
17:complement(23610194..23758059)
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AA seq
721 aa
AA seq
DB search
MDVNQKFGVAGKPGDRAASKQPLWRNWRDMCAVTICIALSVVCLGVCSVVCVRSWELQSR
IVSLEQQQRDAWILSLEQVEPVILGRLDHILDEKLAARLPKTREAREAPHSCLCPPGPPG
PPGRAGFPGDKGSMGIPGRMGLKGQAGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGP
IGLDGKSGQSGPKGDMGQRGAKGIPGEPGPKGEKGVCGDYTHRGLFVQDLPLKTLAALRS
SQALMLKQGEPGAQGPPGPPGPPGLPGTPGLNGATGPMGKPGEPGKPGKDPRLLPGMKGE
AGVPGQKGDRGDVGPLGPQGSKGDMGDQGIKGEPGLTGAPGLKGQAGIPGIPGIPGKRGY
RGEKGDPSVAAQGIKGEPGSPGLPGLMGPKGDTGDRGEKGEAGLEGPAGPRGPAGPTGEP
GKAEIQNNENDIRNIPLMGPPGLPGPPGTPGLPGTKGEVGLPGPPGLDGEKGPRGKPGDP
GPAGPAGPEGPRGESGVMGFAGPKGDKGDVGPSGSPGLDGPTGEKGASGAPGPIGLPGSM
GLKGAPGEGARSEMIYGPPGPPGPPGPVGPAGAQGFSGPKGEPGIGIRGEKGAMGQKGDK
GDRGHLGLPGAHGLDGRPGPVGLIGPSGVSGPAGPKGERGEKGDAGLPGPIGPQGIPGLV
GPQGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNKGQHPFQLAK
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaatcagaagtttggagtcgccggtaaaccgggagacagagcggcttccaag
cagccgctgtggaggaactggagggatatgtgcgcagtaacgatctgcattgcgctgtct
gttgtgtgcctgggggtttgcagcgtggtttgtgtgcggagctgggagctgcagagccgg
atagtaagtctggagcagcagcagcgggacgcgtggatcttgtctctggagcaggtggag
cccgttatcctgggccggctggaccacatcctggacgagaagcttgcagcgcgactaccg
aagacccgagaggcgagggaggccccccacagctgcctgtgtcccccaggacctccaggt
cctcctggacgggcaggctttccgggggacaaaggaagtatggggattcctgggagaatg
ggcttgaaaggacaagcaggggagaagggagcaccaggcgagcctggtctgtctatcatt
ggaccaagaggacctcctggccaaccaggaacaagaggattcccaggattcccaggtcca
atcggcttggatggcaaatctggacagagcggaccgaagggagacatggggcagcggggc
gctaaaggaatcccaggggaacctggacccaaaggggaaaagggcgtatgtggagactac
acacaccggggcctctttgtgcaggatcttcctctgaaaaccctggctgccttgcgctcc
agtcaggctctgatgttgaagcagggcgagcctggagcgcagggacccccgggacctccg
ggacccccaggactcccagggaccccaggcctgaatggagccactggtccaatgggtaag
cctggtgaaccaggcaaaccaggaaaagacccaaggcttctaccaggcatgaagggtgag
gcaggtgtgccaggacaaaagggggatcgaggtgatgttggccctctaggtcctcaaggc
tcaaagggagatatgggagaccaaggaattaagggagaaccaggtttaacgggcgctcct
gggttaaagggccaggctggcatccccggcatccctggcatccccggcaagaggggctac
aggggggagaaaggagatccgagtgttgcagcccagggaattaaaggagaaccaggttca
ccaggacttccaggcctaatgggacccaagggtgatacgggcgaccggggagagaagggg
gaagccggccttgaaggccctgctggaccaagaggtcctgcaggcccaactggggagcca
ggaaaggctgaaatccaaaacaatgaaaatgatattcgcaacatacccctgatgggccca
cctggattacctggacctccagggaccccgggactccctggtaccaagggtgaagttggt
ctaccaggtcctccagggctagacggagagaagggacccaggggaaagcctggagatcct
ggtcctgcaggcccagccggtcctgaaggccccagaggggaaagtggtgtcatgggcttt
gcgggacccaaaggagacaagggagacgtgggtccatctggatcacctggtttagatggc
cctactggtgaaaagggggcttcaggggcccctggccctattggattacctggctcaatg
ggcctaaaaggtgcacctggagaaggtgcaaggtcggaaatgatctatggtcctccaggg
cccccaggacctccaggaccagttggcccagcaggagctcaaggattttcagggcctaag
ggagaaccaggcataggcatcagaggagaaaagggagcgatgggtcagaagggcgacaag
ggagacagaggccatcttggacttcctggggctcatgggttagacggcagaccgggtcca
gtgggtctaataggaccgtcaggtgtgtcagggccagcaggaccaaagggagagagaggt
gaaaagggagatgcaggattaccaggaccaatcgggcctcaaggcatccctggtttagta
ggaccacaaggactcaaaggcaaccggggagagaggggcaagaaaggcaacaggggggcc
aaaggggataagggagaccaaggagcacctggattagatgccccctgtccgttgggagac
gatggcttacctgtaccaggatgttggaataaaggtcaacatcctttccaactggctaag
aagtag
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