Empidonax traillii (willow flycatcher): 114072469
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Entry
114072469 CDS
T05887
Symbol
DDX56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
etl03009
]
114072469 (DDX56)
Enzymes [BR:
etl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114072469 (DDX56)
Ribosome biogenesis [BR:
etl03009
]
Eukaryotic type
Pre-60S particles
Helicases
114072469 (DDX56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
114072469
NCBI-ProteinID:
XP_027766163
LinkDB
All DBs
Position
Unknown
AA seq
808 aa
AA seq
DB search
MAAGTEGSGFEHMGLDPRLLRAVAELGWATPTAIQAQAIPLALEGRDLLARARTGSGKTG
AYGLPLLHKLLSIKEASPALPQAIRALVLVPSAELGRQVGHALRQLSAFCARQLRVVDLC
SQSDPAAQRPVLMEQPDVVVGTPGRVLAHLGGHSLSLRHSLELLVLDEADLLLSFGFGDD
IKALLCHLPKIYQALLVSATFNPELEALQELVLHNPALVLPPEPRLPGHSQLQQFQVRCG
TEEDKFLVLVALLQLRLLRGRALLFVGSLARAFRLKLFLEQFGIPACALNSELPAASRCH
VIAQFNRGLYDFIVATDEEGPVETPQRQARKGGSLGKGKGKGKAKDKGKAKAQDPEYGVA
RGIDFQNVSAVINFDVPPTVESYIHRVGRTARGDNPGTALTLALPEEHEGLTRIEDALAG
ENGQSMLQPYKFCMEEIESLRYRCRDAMRSVTKQAVKEARLREIRDELLNSEKLKTYFED
NPRDLHVLRHDKPLHPAIVKPHLRNVPDYLVPPSLRGIARPGPRKRKGTRVLRGPSARRG
KPAGDLEANHLPKIYQALLVSATFNPELEALQELVLHNPALVLPPEPRLPGHSQLQQFQV
RCGTEEDKFLVLVALLQLRLLRGRALLFVGSLARAFRLKLFLEQFGIPACALNSELPAAS
RCHVIAQFNRGLYDFIVATDEEGPVETPQRQARKGGSLGKGKGKGKAKDKGKAKAQDPEY
GVARGIDFQNVSAVINFDVPPTVESYIHRVGRTARGDNPGTALTLALPEEHEGLTRIEDA
LAGENGQSMLQPYKFCMEEIESLRYRCR
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgggcacggaggggtccggcttcgagcacatgggactggacccgcggctgctg
agggcggtggcagagctgggctgggcaacccccacggccatccaggcccaggccattccc
ctggcactggagggcagggacctactggcacgggccaggacgggctccgggaaaacggga
gcttacgggctgcctctgctgcacaaactgctcagcatcaaggaggcgtctccagcactg
ccccaggccatccgtgccctggtgctggtgccctcggcagagctgggccggcaggtcggg
cacgctttgcgccagctctcggcattctgcgcccgccagctgcgtgtggtggacctgtgc
tcccagagcgaccctgctgcccaaaggcccgtgctgatggagcagcctgacgtagtggtg
ggcaccccggggcgggtcctggcacacctgggcgggcacagcctgagcctgaggcactcg
ctggagctgctggtgttggatgaggccgatctgctgctctcctttggctttggggacgac
atcaaggccctcctctgccacctgcccaagatctaccaggccctgctggtgtcagccacg
ttcaaccccgagctggaggcgctgcaggagcttgtgctgcacaaccctgcgctggtgctg
cccccagagccacggctgccgggccattcccagctgcagcagttccaggtgcgctgtggg
acagaggaggacaagttcctggtgctcgtggccctgctgcagctgcggctgctgcggggc
cgggccctgctcttcgtgggcagcctggccagggccttccgcctcaagctcttcctcgag
cagttcggcatccccgcctgtgccctcaactccgagctgcccgcggcctccaggtgccac
gtcatcgcccagttcaaccgcggcctctacgacttcatcgtggccaccgatgaggagggg
cctgtggagaccccccagcgccaggcacggaaaggggggtccctggggaaggggaagggg
aaggggaaggccaaggacaaggggaaggccaaggcccaggatcccgagtatggggttgcc
cgaggcattgacttccagaacgtctcggccgtcatcaatttcgatgtccctcccacggtc
gagtcctacatccaccgcgtgggcaggacagcccgcggtgacaaccctggcacagcgctg
accctggcactgcccgaggagcacgaggggctcacccgcattgaggatgctctggcagga
gagaacgggcagtccatgctgcagccctacaaattctgcatggaggagatcgagtcactg
cgctaccgctgccgggatgccatgcgctcggtgaccaagcaggcggtgaaggaggcgcgg
ctgcgcgagatcagggacgagctgctcaactctgagaagctcaagacctatttcgaggac
aacccccgggacctgcatgtgctccgccacgacaagcccctgcaccctgccattgtgaaa
cctcacctgagaaacgtgccagactacctggtgccccccagcctccggggcattgccagg
cccggccccaggaaacgaaagggcacccgagtgctccgagggcccagcgcccggagaggg
aaacctgctggggacttggaggcaaaccacctgcccaagatctaccaggccctgctggtg
tcagccacattcaaccccgagctggaggcgctgcaggagcttgtgctgcacaaccctgcg
ctggtgctgcccccagagccacggctgccgggccattcccagctgcagcagttccaggtg
cgctgtgggacagaggaggacaagttcctggtgctcgtggccctgttgcagctgcggctg
ctgcggggccgggccctgctcttcgtgggcagcctggccagggccttccgcctcaagctc
ttcctcgagcagttcggcatccccgcctgtgccctcaactccgagctgcccgcggcctcc
cggtgccacgtcatcgcccagttcaaccgcggcctctacgacttcatcgtggccaccgat
gaggaggggcctgtggagaccccccagcgccaggcacggaaaggggggtccctggggaag
gggaaggggaaggggaaggccaaggacaaggggaaggccaaggcccaggatcccgagtat
ggggttgcccgaggcattgacttccagaacgtctcggccgtcatcaatttcgacgtccct
cccacggtcgagtcctacatccaccgcgtgggcaggacagcccgcggtgacaaccctggc
acagcgctgaccctggcactgcccgaggagcacgaggggctcacccgcattgaggatgct
ctggcaggagagaacgggcagtccatgctgcagccctacaaattctgcatggaggagatc
gagtcactgcgctaccgctgccgg
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