Ficedula albicollis (collared flycatcher): 101808596
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Entry
101808596 CDS
T02815
Symbol
PAPD7
Name
(RefSeq) poly(A) RNA polymerase D7, non-canonical
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101808596 (PAPD7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101808596 (PAPD7)
03016 Transfer RNA biogenesis [BR:
fab03016
]
101808596 (PAPD7)
Enzymes [BR:
fab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
101808596 (PAPD7)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101808596 (PAPD7)
Transfer RNA biogenesis [BR:
fab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101808596 (PAPD7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_assoc
NTP_transf_2
Polbeta
TUTase
PAP_NTPase
Motif
Other DBs
NCBI-GeneID:
101808596
NCBI-ProteinID:
XP_016152116
LinkDB
All DBs
Position
2:complement(84070512..84129979)
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AA seq
768 aa
AA seq
DB search
MDPRVAWIQPEQKGPANALWMQIWETSQGVGGRGGASFPHYLCLNSPALDSAASGAASPP
RGHGCVRLGAPGACCSSSSPPSPSPSPPALLTGLVPAVPGGPAAVNGGGEGGRRLQKSPS
VSSSSSCSSVESGTESPGFSSSGSGGGGGGSSSSSGGPRAVAVAPPGLLGSGAGPGEFFN
FHENKVNAVNGHHQPPHPARSPHPPPASPQQHQYHPGRRKRENKASTYGMNYLLSGSRGV
AGSDSPHQQRQPPQPALQSPGTPWKSRKYSPGVQGLHEEIIDFYDFMSPRPEEAAMRREV
VKRIETVIKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVA
EPYSIKVLDKATVPIIKLTDQETEVKVDISFNVETGVKAARFIKEYMKKYSLLPYLILVL
KQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLGMLLIEFFELYGRNF
NYLKTGIRIKNGGAYIAKEEIMKVMTNGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVF
DYAYIVLSHAVSPLARSYPNRDSESTLGRIIKVTQEVIDYRAWIKKKWGSKINLSPELDN
RLKIRDPIALCNGEQQQNRDSEPSYNQHLALSLANTQQLSSGSSASSVSSLSSSDIESDT
PPCPAPNVYQFSLQAPTQLMASLAPALPLPSGKPQSAPPRALIMAASNQQHNGMKFSMKG
THNQGNSYSPVNSGGMRQPVGNRGHHQYNRNIWRRKKHRDSLPISLSR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggatccccgcgtggcctggatccagcccgagcagaaaggacccgcgaatgcgctgtgg
atgcagatctgggagacctcgcagggcgtggggggccggggcggcgccagcttcccgcac
tacctctgcctcaactccccggcgctggactccgccgcctcgggcgccgcctctccgccc
cgcgggcacggctgcgtgcggctcggggcgcccggcgcctgctgctcctcttcctcgccg
ccttcgccctcgccttccccgccggccctgctgaccggactggtgcccgccgtccccggc
ggccccgcggcggtgaacggcggcggcgagggagggcggcggctgcagaagtcgccttcc
gtgtcttcctcgtcctcctgctcgtcggtggagtccggcaccgagagccccggcttctcc
tcctcgggatccggtggcgggggcggcggctcctcctcttcctccggcggcccccgggcg
gtggcggtggctcctcccgggctgctgggcagcggggccggacccggcgagttttttaac
ttccacgagaacaaagtgaacgctgtgaacgggcaccaccagccgccgcacccggcgcgc
agcccgcacccgcccccggcctctccccagcagcaccagtaccacccgggccgcaggaaa
cgggagaataaagccagcacctatgggatgaattacctgctctccggcagccgcggcgtc
gccggcagcgactccccccaccagcagcggcagccgccccagccggcgctgcagagcccc
ggcaccccctggaagagcaggaaatacagcccgggcgtgcagggactacatgaagaaata
attgacttctatgacttcatgtcccctcgtcctgaagaagcagctatgagaagagaagtg
gtaaaaaggatagaaacagtcatcaaagatctttggcctaccgctgatgtccagatattt
ggcagctttagtacagggctttatcttccaactagtgatattgatctagttgtttttggg
aaatgggaacgaccccctttacagctgttggagcaagcactgagaaaacacaatgtggct
gagccatattccattaaagtacttgacaaagctacggtaccaataataaaactcactgac
caggagacagaagtcaaagttgacatcagttttaatgtagaaactggtgtgaaggcagct
cgatttatcaaagaatacatgaagaaatattctttgctaccttacttgattttagtatta
aaacagttcctccttcagagggatttgaatgaagtttttactggtggaattagctcttac
agcctaattttaatggcaattagtttcctgcagctacatccaagaattgatgccagaaga
gctgatgaaaaccttggaatgcttctaatagaattttttgaactctatggaagaaatttt
aactacttgaaaactggtattagaataaaaaatggaggtgcctatattgccaaagaagaa
atcatgaaagtcatgactaatggatatagaccatccatgctgtgtattgaagatcctctc
ctgcctggaaacgacgttggcagaagttcttatggtgccatgcaagtgaaacaagttttt
gattatgcctacattgttcttagccatgcagtatcaccacttgcaagatcatatccaaat
agagattctgagagcacattaggtagaatcatcaaagtgacccaagaagtgattgactac
agggcctggattaaaaagaagtgggggagcaaaattaatttatcacctgaacttgataat
aggttgaaaataagagacccgatagctctctgcaatggagaacagcagcagaacagagac
tctgaaccatcttacaatcaacacttggcattgtcattggccaatacacaacagttatcc
tctggttcatctgcctcttctgtgtcatcgctctccagcagtgacattgaatcagataca
ccaccttgcccagctcctaatgtttaccagttcagtcttcaagcaccgactcagcttatg
gccagtttagcacccgcattgcccctgccaagtggtaaaccccaatctgcgcctccgaga
gccctgataatggccgccagtaatcagcagcacaatggaatgaagttttccatgaaagga
actcataaccaaggcaacagctacagccctgtcaacagtggaggcatgaggcaaccagtc
ggtaaccggggacaccaccagtacaatcgtaatatatggaggaggaaaaaacacagagac
agcttgcctattagtctgagcagataa
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